Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5276 and Pf1N1B4_5277 are separated by 149 nucleotides Pf1N1B4_5277 and Pf1N1B4_5278 are separated by 155 nucleotides Pf1N1B4_5278 and Pf1N1B4_5279 are separated by 320 nucleotides Pf1N1B4_5279 and Pf1N1B4_5280 are separated by 160 nucleotides
Pf1N1B4_5276 - hypothetical protein, at 32,503 to 32,901
_5276
Pf1N1B4_5277 - Phage protein, at 33,051 to 33,326
_5277
Pf1N1B4_5278 - hypothetical protein, at 33,482 to 33,682
_5278
Pf1N1B4_5279 - hypothetical protein, at 34,003 to 34,209
_5279
Pf1N1B4_5280 - Nucleoid-associated protein, at 34,370 to 35,386
_5280
Position (kb) 33
34 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 32.521 kb on + strand at 32.521 kb on + strand at 32.521 kb on + strand at 32.860 kb on + strand, within Pf1N1B4_5276 at 32.860 kb on + strand, within Pf1N1B4_5276 at 32.860 kb on + strand, within Pf1N1B4_5276 at 32.943 kb on + strand at 32.944 kb on - strand at 33.084 kb on + strand at 33.084 kb on + strand, within Pf1N1B4_5277 at 33.085 kb on - strand, within Pf1N1B4_5277 at 33.085 kb on - strand, within Pf1N1B4_5277 at 33.188 kb on + strand, within Pf1N1B4_5277 at 33.235 kb on + strand, within Pf1N1B4_5277 at 33.236 kb on - strand, within Pf1N1B4_5277 at 33.236 kb on - strand, within Pf1N1B4_5277 at 33.263 kb on + strand, within Pf1N1B4_5277 at 33.263 kb on + strand, within Pf1N1B4_5277 at 33.264 kb on - strand, within Pf1N1B4_5277 at 33.266 kb on + strand, within Pf1N1B4_5277 at 33.266 kb on + strand, within Pf1N1B4_5277 at 33.267 kb on - strand, within Pf1N1B4_5277 at 33.361 kb on - strand at 33.361 kb on - strand at 33.484 kb on - strand at 33.484 kb on - strand at 33.627 kb on - strand, within Pf1N1B4_5278 at 33.650 kb on + strand at 33.650 kb on + strand at 33.650 kb on + strand, within Pf1N1B4_5278 at 33.651 kb on - strand, within Pf1N1B4_5278 at 33.651 kb on - strand at 33.651 kb on - strand, within Pf1N1B4_5278 at 33.765 kb on + strand at 33.838 kb on + strand at 33.953 kb on + strand at 33.969 kb on - strand at 33.993 kb on + strand at 33.994 kb on - strand at 34.022 kb on + strand at 34.085 kb on + strand, within Pf1N1B4_5279 at 34.102 kb on + strand, within Pf1N1B4_5279 at 34.102 kb on + strand, within Pf1N1B4_5279 at 34.102 kb on + strand, within Pf1N1B4_5279 at 34.102 kb on + strand, within Pf1N1B4_5279 at 34.103 kb on - strand, within Pf1N1B4_5279 at 34.103 kb on - strand at 34.213 kb on + strand at 34.213 kb on + strand at 34.214 kb on - strand at 34.214 kb on - strand at 34.214 kb on - strand at 34.267 kb on + strand at 34.267 kb on + strand at 34.268 kb on - strand at 34.268 kb on - strand at 34.268 kb on - strand at 34.605 kb on + strand, within Pf1N1B4_5280 at 34.606 kb on - strand, within Pf1N1B4_5280
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 32,521 + +1.0 32,521 + +0.8 32,521 + +0.6 32,860 + Pf1N1B4_5276 0.89 +0.7 32,860 + Pf1N1B4_5276 0.89 -0.8 32,860 + Pf1N1B4_5276 0.89 +0.2 32,943 + +0.2 32,944 - -0.8 33,084 + +3.0 33,084 + Pf1N1B4_5277 0.12 +1.6 33,085 - Pf1N1B4_5277 0.12 +0.2 33,085 - Pf1N1B4_5277 0.12 -1.4 33,188 + Pf1N1B4_5277 0.50 -0.9 33,235 + Pf1N1B4_5277 0.67 +1.5 33,236 - Pf1N1B4_5277 0.67 +1.0 33,236 - Pf1N1B4_5277 0.67 -1.4 33,263 + Pf1N1B4_5277 0.77 +0.9 33,263 + Pf1N1B4_5277 0.77 +1.6 33,264 - Pf1N1B4_5277 0.77 +0.8 33,266 + Pf1N1B4_5277 0.78 +0.7 33,266 + Pf1N1B4_5277 0.78 +1.2 33,267 - Pf1N1B4_5277 0.78 +1.4 33,361 - +0.4 33,361 - -2.3 33,484 - +2.0 33,484 - -1.2 33,627 - Pf1N1B4_5278 0.72 -1.2 33,650 + +0.4 33,650 + +0.4 33,650 + Pf1N1B4_5278 0.84 -0.2 33,651 - Pf1N1B4_5278 0.84 +0.1 33,651 - +0.4 33,651 - Pf1N1B4_5278 0.84 -0.2 33,765 + -1.0 33,838 + -0.8 33,953 + -0.1 33,969 - +0.6 33,993 + -0.5 33,994 - +0.3 34,022 + +0.1 34,085 + Pf1N1B4_5279 0.40 -0.2 34,102 + Pf1N1B4_5279 0.48 -0.3 34,102 + Pf1N1B4_5279 0.48 +1.6 34,102 + Pf1N1B4_5279 0.48 -0.4 34,102 + Pf1N1B4_5279 0.48 +0.7 34,103 - Pf1N1B4_5279 0.48 +0.4 34,103 - +1.0 34,213 + +1.7 34,213 + -0.0 34,214 - +0.2 34,214 - +0.1 34,214 - +1.0 34,267 + -0.6 34,267 + -0.4 34,268 - +0.6 34,268 - +1.0 34,268 - +1.4 34,605 + Pf1N1B4_5280 0.23 +1.0 34,606 - Pf1N1B4_5280 0.23 -0.4
Or see this region's nucleotide sequence