Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_521 and Pf1N1B4_522 are separated by 189 nucleotides Pf1N1B4_522 and Pf1N1B4_523 are separated by 114 nucleotides Pf1N1B4_523 and Pf1N1B4_524 are separated by 4 nucleotides
Pf1N1B4_521 - ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing, at 618,939 to 621,098
_521
Pf1N1B4_522 - HlyD family secretion protein, at 621,288 to 622,652
_522
Pf1N1B4_523 - FIG00955751: hypothetical protein, at 622,767 to 623,360
_523
Pf1N1B4_524 - Transcriptional regulator GbuR, at 623,365 to 624,258
_524
Position (kb) 621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2 at 620.413 kb on - strand, within Pf1N1B4_521 at 620.413 kb on - strand, within Pf1N1B4_521 at 620.413 kb on - strand, within Pf1N1B4_521 at 620.539 kb on - strand, within Pf1N1B4_521 at 620.539 kb on - strand, within Pf1N1B4_521 at 620.623 kb on - strand, within Pf1N1B4_521 at 620.689 kb on - strand, within Pf1N1B4_521 at 620.689 kb on - strand, within Pf1N1B4_521 at 620.843 kb on - strand, within Pf1N1B4_521 at 621.183 kb on + strand at 621.203 kb on + strand at 621.203 kb on + strand at 621.324 kb on + strand at 621.324 kb on + strand at 621.669 kb on + strand, within Pf1N1B4_522 at 621.669 kb on + strand, within Pf1N1B4_522 at 621.786 kb on + strand, within Pf1N1B4_522 at 622.392 kb on + strand, within Pf1N1B4_522 at 622.398 kb on + strand at 622.407 kb on + strand, within Pf1N1B4_522 at 622.408 kb on - strand, within Pf1N1B4_522 at 622.480 kb on - strand, within Pf1N1B4_522 at 622.480 kb on - strand at 622.571 kb on + strand at 622.571 kb on + strand at 622.571 kb on + strand at 622.599 kb on + strand at 622.599 kb on + strand at 622.608 kb on - strand at 623.062 kb on - strand, within Pf1N1B4_523 at 623.083 kb on + strand, within Pf1N1B4_523 at 623.083 kb on + strand, within Pf1N1B4_523 at 623.084 kb on - strand, within Pf1N1B4_523 at 623.366 kb on + strand at 623.366 kb on + strand at 623.367 kb on - strand at 623.367 kb on - strand at 623.494 kb on + strand, within Pf1N1B4_524 at 623.494 kb on + strand, within Pf1N1B4_524 at 623.494 kb on + strand, within Pf1N1B4_524 at 623.525 kb on + strand, within Pf1N1B4_524 at 623.541 kb on - strand, within Pf1N1B4_524 at 623.549 kb on + strand, within Pf1N1B4_524 at 623.549 kb on + strand, within Pf1N1B4_524 at 623.550 kb on - strand, within Pf1N1B4_524 at 623.550 kb on - strand, within Pf1N1B4_524 at 623.550 kb on - strand, within Pf1N1B4_524 at 623.550 kb on - strand, within Pf1N1B4_524 at 623.586 kb on + strand, within Pf1N1B4_524 at 623.586 kb on + strand, within Pf1N1B4_524 at 623.586 kb on + strand, within Pf1N1B4_524 at 623.586 kb on + strand, within Pf1N1B4_524 at 623.587 kb on - strand, within Pf1N1B4_524
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 620,413 - Pf1N1B4_521 0.68 +0.6 620,413 - Pf1N1B4_521 0.68 +0.6 620,413 - Pf1N1B4_521 0.68 +0.3 620,539 - Pf1N1B4_521 0.74 +0.4 620,539 - Pf1N1B4_521 0.74 -0.5 620,623 - Pf1N1B4_521 0.78 +2.2 620,689 - Pf1N1B4_521 0.81 +0.2 620,689 - Pf1N1B4_521 0.81 +1.6 620,843 - Pf1N1B4_521 0.88 +0.6 621,183 + -1.0 621,203 + -2.1 621,203 + +1.0 621,324 + -0.6 621,324 + -0.3 621,669 + Pf1N1B4_522 0.28 -1.1 621,669 + Pf1N1B4_522 0.28 -2.6 621,786 + Pf1N1B4_522 0.36 -0.8 622,392 + Pf1N1B4_522 0.81 -1.4 622,398 + +0.7 622,407 + Pf1N1B4_522 0.82 -0.4 622,408 - Pf1N1B4_522 0.82 -0.4 622,480 - Pf1N1B4_522 0.87 -0.8 622,480 - -0.8 622,571 + +0.8 622,571 + +0.6 622,571 + -0.8 622,599 + +1.8 622,599 + +1.2 622,608 - +0.3 623,062 - Pf1N1B4_523 0.50 -1.4 623,083 + Pf1N1B4_523 0.53 +0.2 623,083 + Pf1N1B4_523 0.53 -1.1 623,084 - Pf1N1B4_523 0.53 -0.3 623,366 + -1.3 623,366 + -1.2 623,367 - -0.4 623,367 - -1.6 623,494 + Pf1N1B4_524 0.14 -0.6 623,494 + Pf1N1B4_524 0.14 -0.0 623,494 + Pf1N1B4_524 0.14 -1.4 623,525 + Pf1N1B4_524 0.18 +0.2 623,541 - Pf1N1B4_524 0.20 -0.1 623,549 + Pf1N1B4_524 0.21 +0.9 623,549 + Pf1N1B4_524 0.21 -2.3 623,550 - Pf1N1B4_524 0.21 -1.1 623,550 - Pf1N1B4_524 0.21 +1.0 623,550 - Pf1N1B4_524 0.21 -0.3 623,550 - Pf1N1B4_524 0.21 +1.6 623,586 + Pf1N1B4_524 0.25 -0.8 623,586 + Pf1N1B4_524 0.25 -0.6 623,586 + Pf1N1B4_524 0.25 +0.2 623,586 + Pf1N1B4_524 0.25 +0.2 623,587 - Pf1N1B4_524 0.25 -0.6
Or see this region's nucleotide sequence