Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_479

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_478 and Pf1N1B4_479 are separated by 249 nucleotidesPf1N1B4_479 and Pf1N1B4_480 overlap by 20 nucleotides Pf1N1B4_478 - Transglutaminase-like enzymes, putative cysteine proteases, at 569,762 to 570,421 _478 Pf1N1B4_479 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,671 to 570,949 _479 Pf1N1B4_480 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,930 to 573,119 _480 Position (kb) 570 571Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 569.754 kb on - strandat 569.901 kb on + strand, within Pf1N1B4_478at 569.902 kb on - strand, within Pf1N1B4_478at 569.902 kb on - strand, within Pf1N1B4_478at 569.902 kb on - strand, within Pf1N1B4_478at 569.931 kb on + strand, within Pf1N1B4_478at 569.931 kb on + strand, within Pf1N1B4_478at 569.932 kb on - strand, within Pf1N1B4_478at 570.045 kb on + strand, within Pf1N1B4_478at 570.045 kb on + strand, within Pf1N1B4_478at 570.045 kb on + strand, within Pf1N1B4_478at 570.046 kb on - strandat 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.048 kb on - strand, within Pf1N1B4_478at 570.048 kb on - strand, within Pf1N1B4_478at 570.048 kb on - strand, within Pf1N1B4_478at 570.048 kb on - strand, within Pf1N1B4_478at 570.058 kb on - strandat 570.121 kb on + strand, within Pf1N1B4_478at 570.121 kb on + strand, within Pf1N1B4_478at 570.171 kb on - strand, within Pf1N1B4_478at 570.171 kb on - strand, within Pf1N1B4_478at 570.171 kb on - strand, within Pf1N1B4_478at 570.204 kb on + strand, within Pf1N1B4_478at 570.204 kb on + strand, within Pf1N1B4_478at 570.204 kb on + strand, within Pf1N1B4_478at 570.205 kb on - strand, within Pf1N1B4_478at 570.205 kb on - strand, within Pf1N1B4_478at 570.267 kb on + strand, within Pf1N1B4_478at 570.276 kb on + strand, within Pf1N1B4_478at 570.276 kb on + strand, within Pf1N1B4_478at 570.277 kb on - strand, within Pf1N1B4_478at 570.277 kb on - strand, within Pf1N1B4_478at 570.277 kb on - strand, within Pf1N1B4_478at 570.277 kb on - strandat 570.277 kb on - strand, within Pf1N1B4_478at 570.277 kb on - strand, within Pf1N1B4_478at 570.300 kb on + strand, within Pf1N1B4_478at 570.301 kb on - strand, within Pf1N1B4_478at 570.303 kb on + strand, within Pf1N1B4_478at 570.303 kb on + strand, within Pf1N1B4_478at 570.303 kb on + strand, within Pf1N1B4_478at 570.304 kb on - strandat 570.304 kb on - strand, within Pf1N1B4_478at 570.304 kb on - strand, within Pf1N1B4_478at 570.411 kb on + strandat 570.412 kb on - strandat 570.412 kb on - strandat 570.412 kb on - strandat 570.412 kb on - strandat 570.550 kb on - strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.578 kb on - strandat 570.612 kb on + strandat 570.612 kb on + strandat 570.612 kb on + strandat 570.612 kb on + strandat 570.613 kb on - strandat 570.625 kb on + strandat 570.625 kb on + strandat 570.625 kb on + strandat 570.670 kb on + strandat 570.670 kb on + strandat 570.670 kb on + strandat 570.671 kb on - strandat 570.671 kb on - strandat 570.671 kb on - strandat 570.671 kb on - strandat 570.713 kb on + strand, within Pf1N1B4_479at 570.767 kb on + strand, within Pf1N1B4_479at 570.871 kb on + strand, within Pf1N1B4_479at 570.871 kb on + strand, within Pf1N1B4_479at 570.899 kb on - strand, within Pf1N1B4_479at 570.899 kb on - strand, within Pf1N1B4_479at 570.899 kb on - strand, within Pf1N1B4_479at 571.221 kb on + strand, within Pf1N1B4_480at 571.354 kb on - strand, within Pf1N1B4_480at 571.515 kb on + strand, within Pf1N1B4_480at 571.516 kb on - strandat 571.516 kb on - strand, within Pf1N1B4_480at 571.566 kb on + strand, within Pf1N1B4_480at 571.566 kb on + strand, within Pf1N1B4_480at 571.567 kb on - strand, within Pf1N1B4_480at 571.567 kb on - strand, within Pf1N1B4_480at 571.567 kb on - strand, within Pf1N1B4_480at 571.583 kb on - strand, within Pf1N1B4_480at 571.646 kb on - strand, within Pf1N1B4_480at 571.651 kb on + strand, within Pf1N1B4_480at 571.652 kb on - strand, within Pf1N1B4_480at 571.652 kb on - strand, within Pf1N1B4_480at 571.652 kb on - strand, within Pf1N1B4_480at 571.714 kb on + strandat 571.714 kb on + strand, within Pf1N1B4_480at 571.714 kb on + strand, within Pf1N1B4_480at 571.714 kb on + strand, within Pf1N1B4_480at 571.714 kb on + strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.949 kb on + strand, within Pf1N1B4_480

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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569,754 - +0.4
569,901 + Pf1N1B4_478 0.21 -0.3
569,902 - Pf1N1B4_478 0.21 +0.7
569,902 - Pf1N1B4_478 0.21 -0.1
569,902 - Pf1N1B4_478 0.21 -0.2
569,931 + Pf1N1B4_478 0.26 +0.0
569,931 + Pf1N1B4_478 0.26 -0.2
569,932 - Pf1N1B4_478 0.26 -0.0
570,045 + Pf1N1B4_478 0.43 +0.4
570,045 + Pf1N1B4_478 0.43 -1.6
570,045 + Pf1N1B4_478 0.43 -0.4
570,046 - +1.2
570,047 + Pf1N1B4_478 0.43 -0.8
570,047 + Pf1N1B4_478 0.43 +0.0
570,047 + Pf1N1B4_478 0.43 -0.1
570,047 + Pf1N1B4_478 0.43 +1.7
570,047 + Pf1N1B4_478 0.43 +1.6
570,047 + Pf1N1B4_478 0.43 -1.4
570,047 + Pf1N1B4_478 0.43 -1.9
570,047 + Pf1N1B4_478 0.43 +0.7
570,048 - Pf1N1B4_478 0.43 -0.1
570,048 - Pf1N1B4_478 0.43 -0.6
570,048 - Pf1N1B4_478 0.43 -0.2
570,048 - Pf1N1B4_478 0.43 +0.2
570,058 - -0.4
570,121 + Pf1N1B4_478 0.54 +0.2
570,121 + Pf1N1B4_478 0.54 -1.6
570,171 - Pf1N1B4_478 0.62 +1.0
570,171 - Pf1N1B4_478 0.62 -0.3
570,171 - Pf1N1B4_478 0.62 +0.6
570,204 + Pf1N1B4_478 0.67 -0.1
570,204 + Pf1N1B4_478 0.67 -0.6
570,204 + Pf1N1B4_478 0.67 +0.8
570,205 - Pf1N1B4_478 0.67 +0.9
570,205 - Pf1N1B4_478 0.67 +0.7
570,267 + Pf1N1B4_478 0.77 -0.6
570,276 + Pf1N1B4_478 0.78 +1.5
570,276 + Pf1N1B4_478 0.78 +0.2
570,277 - Pf1N1B4_478 0.78 +1.9
570,277 - Pf1N1B4_478 0.78 +0.4
570,277 - Pf1N1B4_478 0.78 +1.9
570,277 - +1.2
570,277 - Pf1N1B4_478 0.78 +0.7
570,277 - Pf1N1B4_478 0.78 -0.2
570,300 + Pf1N1B4_478 0.82 +1.2
570,301 - Pf1N1B4_478 0.82 -0.8
570,303 + Pf1N1B4_478 0.82 +0.8
570,303 + Pf1N1B4_478 0.82 +0.5
570,303 + Pf1N1B4_478 0.82 -1.0
570,304 - -0.4
570,304 - Pf1N1B4_478 0.82 +1.5
570,304 - Pf1N1B4_478 0.82 -0.7
570,411 + +0.2
570,412 - +0.2
570,412 - +0.6
570,412 - +0.7
570,412 - +0.9
570,550 - -0.1
570,577 + +0.4
570,577 + +0.0
570,577 + -1.6
570,577 + +1.4
570,577 + -2.2
570,577 + -1.2
570,577 + -0.3
570,577 + -1.6
570,578 - -0.1
570,612 + -0.6
570,612 + -1.2
570,612 + -0.4
570,612 + -1.4
570,613 - +0.8
570,625 + +0.4
570,625 + -0.9
570,625 + -1.4
570,670 + +0.2
570,670 + -1.0
570,670 + -2.7
570,671 - -1.0
570,671 - -2.0
570,671 - +0.6
570,671 - -0.7
570,713 + Pf1N1B4_479 0.15 -0.7
570,767 + Pf1N1B4_479 0.34 -1.6
570,871 + Pf1N1B4_479 0.72 -2.4
570,871 + Pf1N1B4_479 0.72 -0.3
570,899 - Pf1N1B4_479 0.82 +0.8
570,899 - Pf1N1B4_479 0.82 -0.4
570,899 - Pf1N1B4_479 0.82 -1.2
571,221 + Pf1N1B4_480 0.13 +0.7
571,354 - Pf1N1B4_480 0.19 -0.8
571,515 + Pf1N1B4_480 0.27 +1.2
571,516 - +1.5
571,516 - Pf1N1B4_480 0.27 -0.8
571,566 + Pf1N1B4_480 0.29 +0.4
571,566 + Pf1N1B4_480 0.29 -0.8
571,567 - Pf1N1B4_480 0.29 -0.3
571,567 - Pf1N1B4_480 0.29 -0.0
571,567 - Pf1N1B4_480 0.29 -0.5
571,583 - Pf1N1B4_480 0.30 -0.2
571,646 - Pf1N1B4_480 0.33 +0.7
571,651 + Pf1N1B4_480 0.33 -0.6
571,652 - Pf1N1B4_480 0.33 -1.3
571,652 - Pf1N1B4_480 0.33 -1.0
571,652 - Pf1N1B4_480 0.33 +0.2
571,714 + +0.2
571,714 + Pf1N1B4_480 0.36 +0.7
571,714 + Pf1N1B4_480 0.36 -0.9
571,714 + Pf1N1B4_480 0.36 -0.6
571,714 + Pf1N1B4_480 0.36 +0.2
571,715 - Pf1N1B4_480 0.36 +0.6
571,715 - Pf1N1B4_480 0.36 +3.2
571,715 - Pf1N1B4_480 0.36 -0.3
571,715 - Pf1N1B4_480 0.36 -2.8
571,715 - Pf1N1B4_480 0.36 -0.4
571,715 - Pf1N1B4_480 0.36 +1.2
571,715 - Pf1N1B4_480 0.36 +0.9
571,715 - Pf1N1B4_480 0.36 -0.5
571,715 - Pf1N1B4_480 0.36 +0.6
571,949 + Pf1N1B4_480 0.47 -0.4

Or see this region's nucleotide sequence