Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4585

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4584 and Pf1N1B4_4585 are separated by 1 nucleotidesPf1N1B4_4585 and Pf1N1B4_4586 are separated by 73 nucleotidesPf1N1B4_4586 and Pf1N1B4_4587 are separated by 35 nucleotides Pf1N1B4_4584 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 5,054,442 to 5,056,610 _4584 Pf1N1B4_4585 - Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein, at 5,056,612 to 5,057,190 _4585 Pf1N1B4_4586 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 5,057,264 to 5,057,872 _4586 Pf1N1B4_4587 - probable dioxygenase, at 5,057,908 to 5,058,333 _4587 Position (kb) 5056 5057 5058Strain fitness (log2 ratio) -1 0 1at 5055.682 kb on - strand, within Pf1N1B4_4584at 5055.927 kb on + strand, within Pf1N1B4_4584at 5055.928 kb on - strand, within Pf1N1B4_4584at 5055.928 kb on - strand, within Pf1N1B4_4584at 5056.221 kb on + strand, within Pf1N1B4_4584at 5056.221 kb on + strandat 5056.221 kb on + strand, within Pf1N1B4_4584at 5056.222 kb on - strand, within Pf1N1B4_4584at 5056.367 kb on + strand, within Pf1N1B4_4584at 5056.420 kb on - strandat 5056.758 kb on + strand, within Pf1N1B4_4585at 5056.860 kb on + strand, within Pf1N1B4_4585at 5056.861 kb on - strand, within Pf1N1B4_4585at 5057.185 kb on - strandat 5057.236 kb on - strandat 5057.236 kb on - strandat 5057.759 kb on + strand, within Pf1N1B4_4586at 5057.842 kb on + strandat 5058.126 kb on + strand, within Pf1N1B4_4587at 5058.126 kb on + strand, within Pf1N1B4_4587at 5058.126 kb on + strand, within Pf1N1B4_4587at 5058.127 kb on - strand, within Pf1N1B4_4587

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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5,055,682 - Pf1N1B4_4584 0.57 +0.0
5,055,927 + Pf1N1B4_4584 0.68 -0.0
5,055,928 - Pf1N1B4_4584 0.69 -0.3
5,055,928 - Pf1N1B4_4584 0.69 +0.1
5,056,221 + Pf1N1B4_4584 0.82 -0.0
5,056,221 + +1.7
5,056,221 + Pf1N1B4_4584 0.82 +0.4
5,056,222 - Pf1N1B4_4584 0.82 +1.2
5,056,367 + Pf1N1B4_4584 0.89 -0.5
5,056,420 - +0.1
5,056,758 + Pf1N1B4_4585 0.25 -0.7
5,056,860 + Pf1N1B4_4585 0.43 -0.9
5,056,861 - Pf1N1B4_4585 0.43 -0.3
5,057,185 - +0.5
5,057,236 - +1.3
5,057,236 - -0.0
5,057,759 + Pf1N1B4_4586 0.81 -0.7
5,057,842 + -0.6
5,058,126 + Pf1N1B4_4587 0.51 -0.3
5,058,126 + Pf1N1B4_4587 0.51 -0.8
5,058,126 + Pf1N1B4_4587 0.51 +1.7
5,058,127 - Pf1N1B4_4587 0.51 -0.3

Or see this region's nucleotide sequence