Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4568 and Pf1N1B4_4569 are separated by 195 nucleotides Pf1N1B4_4569 and Pf1N1B4_4570 are separated by 35 nucleotides Pf1N1B4_4570 and Pf1N1B4_4571 are separated by 151 nucleotides
Pf1N1B4_4568 - FIG00793915: hypothetical protein, at 5,041,317 to 5,041,805
_4568
Pf1N1B4_4569 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 5,042,001 to 5,042,618
_4569
Pf1N1B4_4570 - Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23), at 5,042,654 to 5,043,505
_4570
Pf1N1B4_4571 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 5,043,657 to 5,044,589
_4571
Position (kb)
5042
5043
5044 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5041.741 kb on + strand, within Pf1N1B4_4568 at 5041.960 kb on - strand at 5042.026 kb on + strand at 5042.027 kb on - strand at 5042.084 kb on + strand, within Pf1N1B4_4569 at 5042.084 kb on + strand, within Pf1N1B4_4569 at 5042.179 kb on + strand, within Pf1N1B4_4569 at 5042.180 kb on - strand, within Pf1N1B4_4569 at 5042.501 kb on - strand, within Pf1N1B4_4569 at 5042.736 kb on + strand at 5042.952 kb on + strand, within Pf1N1B4_4570 at 5042.953 kb on - strand, within Pf1N1B4_4570 at 5042.953 kb on - strand, within Pf1N1B4_4570 at 5043.004 kb on - strand, within Pf1N1B4_4570 at 5043.066 kb on + strand, within Pf1N1B4_4570 at 5043.067 kb on - strand, within Pf1N1B4_4570 at 5043.067 kb on - strand, within Pf1N1B4_4570 at 5043.338 kb on - strand, within Pf1N1B4_4570 at 5043.760 kb on + strand, within Pf1N1B4_4571 at 5043.760 kb on + strand, within Pf1N1B4_4571 at 5043.760 kb on + strand, within Pf1N1B4_4571 at 5043.765 kb on - strand, within Pf1N1B4_4571 at 5043.765 kb on - strand, within Pf1N1B4_4571 at 5043.875 kb on - strand, within Pf1N1B4_4571
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 5,041,741 + Pf1N1B4_4568 0.87 +0.7 5,041,960 - -0.2 5,042,026 + +0.7 5,042,027 - -0.8 5,042,084 + Pf1N1B4_4569 0.13 -0.4 5,042,084 + Pf1N1B4_4569 0.13 -1.0 5,042,179 + Pf1N1B4_4569 0.29 +0.7 5,042,180 - Pf1N1B4_4569 0.29 -0.9 5,042,501 - Pf1N1B4_4569 0.81 +0.7 5,042,736 + -1.2 5,042,952 + Pf1N1B4_4570 0.35 -0.8 5,042,953 - Pf1N1B4_4570 0.35 -0.5 5,042,953 - Pf1N1B4_4570 0.35 -0.4 5,043,004 - Pf1N1B4_4570 0.41 -1.6 5,043,066 + Pf1N1B4_4570 0.48 +0.7 5,043,067 - Pf1N1B4_4570 0.48 -1.1 5,043,067 - Pf1N1B4_4570 0.48 -2.1 5,043,338 - Pf1N1B4_4570 0.80 -2.9 5,043,760 + Pf1N1B4_4571 0.11 -0.3 5,043,760 + Pf1N1B4_4571 0.11 -0.9 5,043,760 + Pf1N1B4_4571 0.11 -0.3 5,043,765 - Pf1N1B4_4571 0.12 -0.7 5,043,765 - Pf1N1B4_4571 0.12 -0.3 5,043,875 - Pf1N1B4_4571 0.23 -1.3
Or see this region's nucleotide sequence