Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4029

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4028 and Pf1N1B4_4029 are separated by 7 nucleotidesPf1N1B4_4029 and Pf1N1B4_4030 are separated by 39 nucleotides Pf1N1B4_4028 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 4,478,252 to 4,479,715 _4028 Pf1N1B4_4029 - NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3), at 4,479,723 to 4,481,255 _4029 Pf1N1B4_4030 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 4,481,295 to 4,483,148 _4030 Position (kb) 4479 4480 4481 4482Strain fitness (log2 ratio) -3 -2 -1 0 1at 4479.228 kb on + strand, within Pf1N1B4_4028at 4479.228 kb on + strand, within Pf1N1B4_4028at 4479.229 kb on - strand, within Pf1N1B4_4028at 4479.435 kb on + strand, within Pf1N1B4_4028at 4479.489 kb on + strand, within Pf1N1B4_4028at 4479.490 kb on - strand, within Pf1N1B4_4028at 4479.830 kb on - strandat 4480.155 kb on - strand, within Pf1N1B4_4029at 4480.162 kb on + strand, within Pf1N1B4_4029at 4480.259 kb on - strand, within Pf1N1B4_4029at 4480.259 kb on - strand, within Pf1N1B4_4029at 4480.352 kb on - strand, within Pf1N1B4_4029at 4480.444 kb on + strand, within Pf1N1B4_4029at 4480.444 kb on + strand, within Pf1N1B4_4029at 4480.588 kb on + strand, within Pf1N1B4_4029at 4480.801 kb on + strand, within Pf1N1B4_4029at 4480.802 kb on - strand, within Pf1N1B4_4029at 4481.325 kb on + strandat 4481.861 kb on - strand, within Pf1N1B4_4030at 4481.861 kb on - strand, within Pf1N1B4_4030at 4481.954 kb on - strand, within Pf1N1B4_4030at 4482.168 kb on + strand, within Pf1N1B4_4030at 4482.215 kb on - strand, within Pf1N1B4_4030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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4,479,228 + Pf1N1B4_4028 0.67 -0.8
4,479,228 + Pf1N1B4_4028 0.67 -2.4
4,479,229 - Pf1N1B4_4028 0.67 -1.2
4,479,435 + Pf1N1B4_4028 0.81 -1.4
4,479,489 + Pf1N1B4_4028 0.84 -0.5
4,479,490 - Pf1N1B4_4028 0.85 -1.7
4,479,830 - -1.5
4,480,155 - Pf1N1B4_4029 0.28 -0.1
4,480,162 + Pf1N1B4_4029 0.29 -1.7
4,480,259 - Pf1N1B4_4029 0.35 -2.9
4,480,259 - Pf1N1B4_4029 0.35 +0.2
4,480,352 - Pf1N1B4_4029 0.41 -1.9
4,480,444 + Pf1N1B4_4029 0.47 +0.9
4,480,444 + Pf1N1B4_4029 0.47 +0.9
4,480,588 + Pf1N1B4_4029 0.56 -1.7
4,480,801 + Pf1N1B4_4029 0.70 +0.1
4,480,802 - Pf1N1B4_4029 0.70 -1.9
4,481,325 + -0.8
4,481,861 - Pf1N1B4_4030 0.31 -0.1
4,481,861 - Pf1N1B4_4030 0.31 -2.2
4,481,954 - Pf1N1B4_4030 0.36 -0.9
4,482,168 + Pf1N1B4_4030 0.47 -3.2
4,482,215 - Pf1N1B4_4030 0.50 +0.5

Or see this region's nucleotide sequence