Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4004

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4002 and Pf1N1B4_4003 are separated by 126 nucleotidesPf1N1B4_4003 and Pf1N1B4_4004 overlap by 4 nucleotidesPf1N1B4_4004 and Pf1N1B4_4005 are separated by 262 nucleotides Pf1N1B4_4002 - Inner membrane component of tripartite multidrug resistance system, at 4,450,875 to 4,452,404 _4002 Pf1N1B4_4003 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 4,452,531 to 4,453,283 _4003 Pf1N1B4_4004 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 4,453,280 to 4,453,783 _4004 Pf1N1B4_4005 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 4,454,046 to 4,455,743 _4005 Position (kb) 4453 4454Strain fitness (log2 ratio) -1 0 1 2at 4452.300 kb on + strandat 4452.301 kb on - strandat 4453.326 kb on - strandat 4453.410 kb on - strand, within Pf1N1B4_4004at 4453.417 kb on - strand, within Pf1N1B4_4004at 4453.534 kb on - strand, within Pf1N1B4_4004at 4453.800 kb on - strandat 4453.825 kb on - strandat 4453.870 kb on + strandat 4453.918 kb on + strandat 4453.919 kb on - strandat 4453.974 kb on + strandat 4454.030 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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4,452,300 + +0.1
4,452,301 - +0.4
4,453,326 - -0.1
4,453,410 - Pf1N1B4_4004 0.26 -0.8
4,453,417 - Pf1N1B4_4004 0.27 -0.4
4,453,534 - Pf1N1B4_4004 0.50 -1.2
4,453,800 - +1.9
4,453,825 - +0.9
4,453,870 + +0.6
4,453,918 + +0.6
4,453,919 - +1.3
4,453,974 + -0.6
4,454,030 + -0.1

Or see this region's nucleotide sequence