Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3325

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3323 and Pf1N1B4_3324 are separated by 30 nucleotidesPf1N1B4_3324 and Pf1N1B4_3325 are separated by 8 nucleotidesPf1N1B4_3325 and Pf1N1B4_3326 are separated by 243 nucleotides Pf1N1B4_3323 - RNA polymerase sigma-H factor AlgT, at 3,711,515 to 3,712,096 _3323 Pf1N1B4_3324 - Sigma factor RpoE negative regulatory protein RseA, at 3,712,127 to 3,712,714 _3324 Pf1N1B4_3325 - Sigma factor RpoE negative regulatory protein RseB precursor, at 3,712,723 to 3,713,685 _3325 Pf1N1B4_3326 - HtrA protease/chaperone protein, at 3,713,929 to 3,715,359 _3326 Position (kb) 3712 3713 3714Strain fitness (log2 ratio) -2 -1 0 1 2at 3712.743 kb on + strandat 3712.931 kb on + strand, within Pf1N1B4_3325at 3713.412 kb on + strand, within Pf1N1B4_3325at 3713.412 kb on + strand, within Pf1N1B4_3325at 3713.574 kb on + strand, within Pf1N1B4_3325at 3713.649 kb on + strandat 3713.649 kb on + strandat 3713.649 kb on + strandat 3713.649 kb on + strandat 3713.749 kb on + strandat 3713.806 kb on + strandat 3713.808 kb on + strandat 3713.901 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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3,712,743 + +0.1
3,712,931 + Pf1N1B4_3325 0.22 -1.0
3,713,412 + Pf1N1B4_3325 0.72 -1.0
3,713,412 + Pf1N1B4_3325 0.72 -2.0
3,713,574 + Pf1N1B4_3325 0.88 -0.1
3,713,649 + -0.8
3,713,649 + +0.0
3,713,649 + -0.1
3,713,649 + +1.9
3,713,749 + -0.0
3,713,806 + -0.5
3,713,808 + +0.4
3,713,901 + -0.5

Or see this region's nucleotide sequence