Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1830

Experiment: D-Gluconic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1828 and Pf1N1B4_1829 overlap by 16 nucleotidesPf1N1B4_1829 and Pf1N1B4_1830 are separated by 216 nucleotidesPf1N1B4_1830 and Pf1N1B4_1831 overlap by 1 nucleotides Pf1N1B4_1828 - Mobile element protein, at 2,105,255 to 2,106,046 _1828 Pf1N1B4_1829 - Mobile element protein, at 2,106,031 to 2,106,282 _1829 Pf1N1B4_1830 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 2,106,499 to 2,107,311 _1830 Pf1N1B4_1831 - Tryptophan synthase beta chain (EC 4.2.1.20), at 2,107,311 to 2,108,540 _1831 Position (kb) 2106 2107 2108Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2106.379 kb on + strandat 2106.379 kb on + strandat 2106.380 kb on - strandat 2106.380 kb on - strandat 2106.380 kb on - strandat 2106.380 kb on - strandat 2106.423 kb on + strandat 2106.424 kb on - strandat 2106.424 kb on - strandat 2106.451 kb on + strandat 2106.451 kb on + strandat 2106.452 kb on - strandat 2106.452 kb on - strandat 2106.452 kb on - strandat 2106.452 kb on - strandat 2106.452 kb on - strandat 2106.471 kb on + strandat 2106.471 kb on + strandat 2106.471 kb on + strandat 2106.472 kb on - strandat 2106.494 kb on + strandat 2106.494 kb on + strandat 2106.494 kb on + strandat 2106.494 kb on + strandat 2106.494 kb on + strandat 2106.495 kb on - strandat 2106.516 kb on + strandat 2106.517 kb on - strandat 2106.517 kb on - strandat 2106.517 kb on - strandat 2106.520 kb on + strandat 2106.520 kb on + strandat 2106.554 kb on - strandat 2106.667 kb on - strand, within Pf1N1B4_1830at 2106.667 kb on - strand, within Pf1N1B4_1830at 2106.667 kb on - strand, within Pf1N1B4_1830at 2106.667 kb on - strand, within Pf1N1B4_1830at 2106.782 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.786 kb on - strand, within Pf1N1B4_1830at 2106.789 kb on - strand, within Pf1N1B4_1830at 2106.789 kb on - strand, within Pf1N1B4_1830at 2106.789 kb on - strand, within Pf1N1B4_1830at 2106.789 kb on - strand, within Pf1N1B4_1830at 2106.789 kb on - strand, within Pf1N1B4_1830at 2106.789 kb on - strand, within Pf1N1B4_1830at 2106.815 kb on - strand, within Pf1N1B4_1830at 2106.815 kb on - strand, within Pf1N1B4_1830at 2106.815 kb on - strand, within Pf1N1B4_1830at 2106.907 kb on - strand, within Pf1N1B4_1830at 2106.907 kb on - strand, within Pf1N1B4_1830at 2106.907 kb on - strand, within Pf1N1B4_1830at 2106.907 kb on - strand, within Pf1N1B4_1830at 2106.987 kb on - strand, within Pf1N1B4_1830at 2106.987 kb on - strand, within Pf1N1B4_1830at 2106.987 kb on - strand, within Pf1N1B4_1830at 2106.987 kb on - strand, within Pf1N1B4_1830at 2106.987 kb on - strand, within Pf1N1B4_1830at 2106.987 kb on - strand, within Pf1N1B4_1830at 2106.987 kb on - strand, within Pf1N1B4_1830at 2106.987 kb on - strand, within Pf1N1B4_1830at 2106.987 kb on - strand, within Pf1N1B4_1830at 2107.008 kb on - strand, within Pf1N1B4_1830at 2107.008 kb on - strand, within Pf1N1B4_1830at 2107.008 kb on - strand, within Pf1N1B4_1830at 2107.172 kb on - strand, within Pf1N1B4_1830at 2107.172 kb on - strand, within Pf1N1B4_1830at 2107.224 kb on - strand, within Pf1N1B4_1830at 2107.224 kb on - strand, within Pf1N1B4_1830at 2107.224 kb on - strand, within Pf1N1B4_1830at 2107.224 kb on - strand, within Pf1N1B4_1830at 2107.224 kb on - strand, within Pf1N1B4_1830at 2107.224 kb on - strand, within Pf1N1B4_1830at 2107.482 kb on - strand, within Pf1N1B4_1831at 2107.482 kb on - strand, within Pf1N1B4_1831at 2107.546 kb on + strand, within Pf1N1B4_1831at 2107.547 kb on - strand, within Pf1N1B4_1831at 2107.547 kb on - strand, within Pf1N1B4_1831at 2107.547 kb on - strand, within Pf1N1B4_1831at 2107.547 kb on - strand, within Pf1N1B4_1831at 2107.547 kb on - strand, within Pf1N1B4_1831at 2107.547 kb on - strand, within Pf1N1B4_1831at 2107.547 kb on - strand, within Pf1N1B4_1831at 2107.601 kb on - strand, within Pf1N1B4_1831at 2107.961 kb on - strand, within Pf1N1B4_1831at 2107.961 kb on - strand, within Pf1N1B4_1831at 2107.961 kb on - strand, within Pf1N1B4_1831at 2107.961 kb on - strand, within Pf1N1B4_1831at 2108.019 kb on - strand, within Pf1N1B4_1831at 2108.019 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.120 kb on - strand, within Pf1N1B4_1831at 2108.297 kb on - strand, within Pf1N1B4_1831at 2108.297 kb on - strand, within Pf1N1B4_1831at 2108.297 kb on - strand, within Pf1N1B4_1831at 2108.297 kb on - strand, within Pf1N1B4_1831at 2108.297 kb on - strand, within Pf1N1B4_1831

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
remove
2,106,379 + -0.3
2,106,379 + -1.7
2,106,380 - -0.4
2,106,380 - -1.3
2,106,380 - +1.2
2,106,380 - -0.4
2,106,423 + -1.1
2,106,424 - -1.3
2,106,424 - +1.7
2,106,451 + -0.1
2,106,451 + -1.6
2,106,452 - +0.7
2,106,452 - +1.0
2,106,452 - +0.7
2,106,452 - +0.9
2,106,452 - +0.7
2,106,471 + +0.2
2,106,471 + +1.2
2,106,471 + +0.7
2,106,472 - -1.8
2,106,494 + -0.5
2,106,494 + -0.8
2,106,494 + +0.6
2,106,494 + +0.7
2,106,494 + +1.0
2,106,495 - +0.7
2,106,516 + -1.7
2,106,517 - -0.4
2,106,517 - +0.6
2,106,517 - -0.1
2,106,520 + +0.2
2,106,520 + +0.5
2,106,554 - -1.3
2,106,667 - Pf1N1B4_1830 0.21 -1.3
2,106,667 - Pf1N1B4_1830 0.21 -0.6
2,106,667 - Pf1N1B4_1830 0.21 -1.3
2,106,667 - Pf1N1B4_1830 0.21 -0.4
2,106,782 - Pf1N1B4_1830 0.35 -1.8
2,106,786 - Pf1N1B4_1830 0.35 -1.4
2,106,786 - Pf1N1B4_1830 0.35 -2.7
2,106,786 - Pf1N1B4_1830 0.35 -1.6
2,106,786 - Pf1N1B4_1830 0.35 -2.1
2,106,786 - Pf1N1B4_1830 0.35 -2.6
2,106,786 - Pf1N1B4_1830 0.35 -0.4
2,106,786 - Pf1N1B4_1830 0.35 -0.8
2,106,786 - Pf1N1B4_1830 0.35 -2.0
2,106,786 - Pf1N1B4_1830 0.35 -2.6
2,106,786 - Pf1N1B4_1830 0.35 -0.6
2,106,786 - Pf1N1B4_1830 0.35 -1.6
2,106,786 - Pf1N1B4_1830 0.35 -0.3
2,106,789 - Pf1N1B4_1830 0.36 -0.8
2,106,789 - Pf1N1B4_1830 0.36 +0.2
2,106,789 - Pf1N1B4_1830 0.36 -1.7
2,106,789 - Pf1N1B4_1830 0.36 -0.9
2,106,789 - Pf1N1B4_1830 0.36 -1.3
2,106,789 - Pf1N1B4_1830 0.36 -1.2
2,106,815 - Pf1N1B4_1830 0.39 -1.6
2,106,815 - Pf1N1B4_1830 0.39 -1.4
2,106,815 - Pf1N1B4_1830 0.39 -0.8
2,106,907 - Pf1N1B4_1830 0.50 -2.3
2,106,907 - Pf1N1B4_1830 0.50 -2.1
2,106,907 - Pf1N1B4_1830 0.50 -1.4
2,106,907 - Pf1N1B4_1830 0.50 -2.7
2,106,987 - Pf1N1B4_1830 0.60 -2.0
2,106,987 - Pf1N1B4_1830 0.60 -0.8
2,106,987 - Pf1N1B4_1830 0.60 +0.0
2,106,987 - Pf1N1B4_1830 0.60 -1.8
2,106,987 - Pf1N1B4_1830 0.60 +0.4
2,106,987 - Pf1N1B4_1830 0.60 -1.6
2,106,987 - Pf1N1B4_1830 0.60 -2.2
2,106,987 - Pf1N1B4_1830 0.60 -2.5
2,106,987 - Pf1N1B4_1830 0.60 -1.4
2,107,008 - Pf1N1B4_1830 0.63 -1.1
2,107,008 - Pf1N1B4_1830 0.63 -3.0
2,107,008 - Pf1N1B4_1830 0.63 -2.4
2,107,172 - Pf1N1B4_1830 0.83 -1.8
2,107,172 - Pf1N1B4_1830 0.83 -3.0
2,107,224 - Pf1N1B4_1830 0.89 -1.7
2,107,224 - Pf1N1B4_1830 0.89 -2.7
2,107,224 - Pf1N1B4_1830 0.89 -0.8
2,107,224 - Pf1N1B4_1830 0.89 -2.0
2,107,224 - Pf1N1B4_1830 0.89 -0.6
2,107,224 - Pf1N1B4_1830 0.89 -0.6
2,107,482 - Pf1N1B4_1831 0.14 -1.7
2,107,482 - Pf1N1B4_1831 0.14 -2.1
2,107,546 + Pf1N1B4_1831 0.19 -1.4
2,107,547 - Pf1N1B4_1831 0.19 -1.6
2,107,547 - Pf1N1B4_1831 0.19 -1.6
2,107,547 - Pf1N1B4_1831 0.19 -0.8
2,107,547 - Pf1N1B4_1831 0.19 -2.2
2,107,547 - Pf1N1B4_1831 0.19 -2.6
2,107,547 - Pf1N1B4_1831 0.19 -2.3
2,107,547 - Pf1N1B4_1831 0.19 -0.6
2,107,601 - Pf1N1B4_1831 0.24 +0.2
2,107,961 - Pf1N1B4_1831 0.53 -0.8
2,107,961 - Pf1N1B4_1831 0.53 -0.8
2,107,961 - Pf1N1B4_1831 0.53 -2.7
2,107,961 - Pf1N1B4_1831 0.53 -1.4
2,108,019 - Pf1N1B4_1831 0.58 -2.1
2,108,019 - Pf1N1B4_1831 0.58 -3.3
2,108,120 - Pf1N1B4_1831 0.66 -3.3
2,108,120 - Pf1N1B4_1831 0.66 -2.0
2,108,120 - Pf1N1B4_1831 0.66 -1.7
2,108,120 - Pf1N1B4_1831 0.66 -2.5
2,108,120 - Pf1N1B4_1831 0.66 -2.4
2,108,120 - Pf1N1B4_1831 0.66 -3.6
2,108,120 - Pf1N1B4_1831 0.66 -1.7
2,108,120 - Pf1N1B4_1831 0.66 +0.6
2,108,120 - Pf1N1B4_1831 0.66 -1.1
2,108,120 - Pf1N1B4_1831 0.66 -1.8
2,108,120 - Pf1N1B4_1831 0.66 -1.6
2,108,120 - Pf1N1B4_1831 0.66 -2.2
2,108,120 - Pf1N1B4_1831 0.66 -2.0
2,108,120 - Pf1N1B4_1831 0.66 -2.1
2,108,120 - Pf1N1B4_1831 0.66 -2.4
2,108,120 - Pf1N1B4_1831 0.66 +0.3
2,108,120 - Pf1N1B4_1831 0.66 -5.2
2,108,120 - Pf1N1B4_1831 0.66 -2.8
2,108,120 - Pf1N1B4_1831 0.66 -2.7
2,108,120 - Pf1N1B4_1831 0.66 -2.2
2,108,120 - Pf1N1B4_1831 0.66 -1.1
2,108,120 - Pf1N1B4_1831 0.66 -2.0
2,108,120 - Pf1N1B4_1831 0.66 -2.5
2,108,120 - Pf1N1B4_1831 0.66 -2.5
2,108,120 - Pf1N1B4_1831 0.66 -2.5
2,108,120 - Pf1N1B4_1831 0.66 +0.6
2,108,120 - Pf1N1B4_1831 0.66 -1.3
2,108,120 - Pf1N1B4_1831 0.66 -1.3
2,108,120 - Pf1N1B4_1831 0.66 -1.3
2,108,120 - Pf1N1B4_1831 0.66 -0.8
2,108,120 - Pf1N1B4_1831 0.66 -2.1
2,108,120 - Pf1N1B4_1831 0.66 -1.8
2,108,297 - Pf1N1B4_1831 0.80 +0.4
2,108,297 - Pf1N1B4_1831 0.80 -1.1
2,108,297 - Pf1N1B4_1831 0.80 -2.2
2,108,297 - Pf1N1B4_1831 0.80 -3.0
2,108,297 - Pf1N1B4_1831 0.80 -4.2

Or see this region's nucleotide sequence