Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1475

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1474 and Pf1N1B4_1475 are separated by 216 nucleotidesPf1N1B4_1475 and Pf1N1B4_1476 overlap by 6 nucleotides Pf1N1B4_1474 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 1,689,121 to 1,692,060 _1474 Pf1N1B4_1475 - FIG00962376: hypothetical protein, at 1,692,277 to 1,692,450 _1475 Pf1N1B4_1476 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 1,692,445 to 1,695,090 _1476 Position (kb) 1692 1693Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1691.603 kb on + strand, within Pf1N1B4_1474at 1691.603 kb on + strand, within Pf1N1B4_1474at 1691.604 kb on - strand, within Pf1N1B4_1474at 1691.604 kb on - strand, within Pf1N1B4_1474at 1691.604 kb on - strand, within Pf1N1B4_1474at 1691.604 kb on - strand, within Pf1N1B4_1474at 1692.026 kb on - strandat 1692.026 kb on - strandat 1692.066 kb on - strandat 1692.096 kb on + strandat 1692.096 kb on + strandat 1692.097 kb on - strandat 1692.097 kb on - strandat 1692.097 kb on - strandat 1692.228 kb on + strandat 1692.252 kb on + strandat 1692.275 kb on + strandat 1692.288 kb on + strandat 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.347 kb on + strand, within Pf1N1B4_1475at 1692.348 kb on - strand, within Pf1N1B4_1475at 1692.370 kb on + strand, within Pf1N1B4_1475at 1692.370 kb on + strand, within Pf1N1B4_1475at 1692.370 kb on + strand, within Pf1N1B4_1475at 1692.370 kb on + strand, within Pf1N1B4_1475at 1692.370 kb on + strand, within Pf1N1B4_1475at 1692.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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1,691,603 + Pf1N1B4_1474 0.84 -0.6
1,691,603 + Pf1N1B4_1474 0.84 +2.6
1,691,604 - Pf1N1B4_1474 0.84 +0.0
1,691,604 - Pf1N1B4_1474 0.84 -0.9
1,691,604 - Pf1N1B4_1474 0.84 -1.0
1,691,604 - Pf1N1B4_1474 0.84 +1.0
1,692,026 - +0.1
1,692,026 - +1.0
1,692,066 - -0.6
1,692,096 + -0.9
1,692,096 + -0.3
1,692,097 - +0.0
1,692,097 - -0.7
1,692,097 - -0.1
1,692,228 + +2.8
1,692,252 + +0.0
1,692,275 + -1.1
1,692,288 + +1.6
1,692,347 + Pf1N1B4_1475 0.40 +1.2
1,692,347 + Pf1N1B4_1475 0.40 -1.4
1,692,347 + Pf1N1B4_1475 0.40 -1.8
1,692,347 + Pf1N1B4_1475 0.40 -0.6
1,692,347 + Pf1N1B4_1475 0.40 -4.1
1,692,347 + Pf1N1B4_1475 0.40 -0.7
1,692,347 + Pf1N1B4_1475 0.40 -1.2
1,692,347 + Pf1N1B4_1475 0.40 -0.7
1,692,347 + Pf1N1B4_1475 0.40 +0.2
1,692,347 + Pf1N1B4_1475 0.40 +1.6
1,692,347 + Pf1N1B4_1475 0.40 +1.2
1,692,347 + Pf1N1B4_1475 0.40 +0.9
1,692,347 + Pf1N1B4_1475 0.40 -0.1
1,692,347 + Pf1N1B4_1475 0.40 -0.4
1,692,348 - Pf1N1B4_1475 0.41 +0.0
1,692,370 + Pf1N1B4_1475 0.53 +0.0
1,692,370 + Pf1N1B4_1475 0.53 -1.9
1,692,370 + Pf1N1B4_1475 0.53 -0.7
1,692,370 + Pf1N1B4_1475 0.53 +0.5
1,692,370 + Pf1N1B4_1475 0.53 -1.0
1,692,796 + +3.9

Or see this region's nucleotide sequence