Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09345

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS09340 and HSERO_RS09345 are separated by 79 nucleotidesHSERO_RS09345 and HSERO_RS09350 are separated by 320 nucleotidesHSERO_RS09350 and HSERO_RS09355 are separated by 100 nucleotides HSERO_RS09340: HSERO_RS09340 - acetyl-CoA carboxylase subunit alpha, at 2,123,321 to 2,124,301 _RS09340 HSERO_RS09345: HSERO_RS09345 - tRNA(Ile)-lysidine synthetase, at 2,124,381 to 2,125,799 _RS09345 HSERO_RS09350: HSERO_RS09350 - hypothetical protein, at 2,126,120 to 2,126,407 _RS09350 HSERO_RS09355: HSERO_RS09355 - hypothetical protein, at 2,126,508 to 2,126,813 _RS09355 Position (kb) 2124 2125 2126Strain fitness (log2 ratio) -1 0 1 2at 2125.961 kb on - strandat 2126.030 kb on + strandat 2126.052 kb on + strandat 2126.052 kb on + strandat 2126.100 kb on + strandat 2126.108 kb on - strandat 2126.433 kb on + strandat 2126.584 kb on + strand, within HSERO_RS09355at 2126.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,125,961 - +2.2
2,126,030 + -0.3
2,126,052 + +0.2
2,126,052 + -0.7
2,126,100 + +0.9
2,126,108 - +0.3
2,126,433 + +0.4
2,126,584 + HSERO_RS09355 0.25 +0.0
2,126,784 - +2.2

Or see this region's nucleotide sequence