Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03560 and HSERO_RS03565 are separated by 39 nucleotides HSERO_RS03565 and HSERO_RS03570 are separated by 37 nucleotides HSERO_RS03570 and HSERO_RS03575 are separated by 59 nucleotides
HSERO_RS03560: HSERO_RS03560 - TonB-denpendent receptor, at 774,925 to 777,054
_RS03560
HSERO_RS03565: HSERO_RS03565 - metal-dependent hydrolase, at 777,094 to 778,083
_RS03565
HSERO_RS03570: HSERO_RS03570 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 778,121 to 778,924
_RS03570
HSERO_RS03575: HSERO_RS03575 - D,D-heptose 1,7-bisphosphate phosphatase, at 778,984 to 779,541
_RS03575
Position (kb) 777
778
779 Strain fitness (log2 ratio) -1
0
1
2 at 776.450 kb on - strand, within HSERO_RS03560 at 776.650 kb on - strand, within HSERO_RS03560 at 776.751 kb on - strand, within HSERO_RS03560 at 776.757 kb on - strand, within HSERO_RS03560 at 776.979 kb on + strand at 776.995 kb on + strand at 777.179 kb on + strand at 777.344 kb on + strand, within HSERO_RS03565 at 777.419 kb on + strand, within HSERO_RS03565 at 777.438 kb on + strand, within HSERO_RS03565 at 777.439 kb on + strand, within HSERO_RS03565 at 777.506 kb on - strand, within HSERO_RS03565 at 777.650 kb on + strand, within HSERO_RS03565 at 777.864 kb on - strand, within HSERO_RS03565 at 778.118 kb on + strand at 778.119 kb on + strand at 778.127 kb on - strand at 778.981 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 776,450 - HSERO_RS03560 0.72 -0.0 776,650 - HSERO_RS03560 0.81 +1.6 776,751 - HSERO_RS03560 0.86 -0.0 776,757 - HSERO_RS03560 0.86 -0.2 776,979 + -0.4 776,995 + -0.2 777,179 + -0.4 777,344 + HSERO_RS03565 0.25 -0.4 777,419 + HSERO_RS03565 0.33 +0.3 777,438 + HSERO_RS03565 0.35 +0.2 777,439 + HSERO_RS03565 0.35 +0.9 777,506 - HSERO_RS03565 0.42 -0.8 777,650 + HSERO_RS03565 0.56 -0.3 777,864 - HSERO_RS03565 0.78 +0.2 778,118 + +0.1 778,119 + +0.2 778,127 - +2.1 778,981 + +0.2
Or see this region's nucleotide sequence