Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03555 and HSERO_RS03560 are separated by 221 nucleotides HSERO_RS03560 and HSERO_RS03565 are separated by 39 nucleotides
HSERO_RS03555: HSERO_RS03555 - chloride channel protein, at 773,420 to 774,703
_RS03555
HSERO_RS03560: HSERO_RS03560 - TonB-denpendent receptor, at 774,925 to 777,054
_RS03560
HSERO_RS03565: HSERO_RS03565 - metal-dependent hydrolase, at 777,094 to 778,083
_RS03565
Position (kb) 774
775
776
777
778 Strain fitness (log2 ratio) -1
0
1 at 773.977 kb on - strand, within HSERO_RS03555 at 774.175 kb on + strand, within HSERO_RS03555 at 774.358 kb on + strand, within HSERO_RS03555 at 774.910 kb on + strand at 774.960 kb on + strand at 775.034 kb on + strand at 775.051 kb on + strand at 775.070 kb on + strand at 775.070 kb on + strand at 775.073 kb on - strand at 775.172 kb on - strand, within HSERO_RS03560 at 775.184 kb on + strand, within HSERO_RS03560 at 775.184 kb on + strand, within HSERO_RS03560 at 775.439 kb on - strand, within HSERO_RS03560 at 775.543 kb on - strand at 775.565 kb on + strand, within HSERO_RS03560 at 775.571 kb on - strand, within HSERO_RS03560 at 775.686 kb on + strand, within HSERO_RS03560 at 775.745 kb on + strand, within HSERO_RS03560 at 775.831 kb on - strand, within HSERO_RS03560 at 776.034 kb on + strand, within HSERO_RS03560 at 776.044 kb on + strand, within HSERO_RS03560 at 776.450 kb on - strand, within HSERO_RS03560 at 776.650 kb on - strand, within HSERO_RS03560 at 776.751 kb on - strand, within HSERO_RS03560 at 776.757 kb on - strand, within HSERO_RS03560 at 776.979 kb on + strand at 776.995 kb on + strand at 777.179 kb on + strand at 777.344 kb on + strand, within HSERO_RS03565 at 777.419 kb on + strand, within HSERO_RS03565 at 777.438 kb on + strand, within HSERO_RS03565 at 777.439 kb on + strand, within HSERO_RS03565 at 777.506 kb on - strand, within HSERO_RS03565 at 777.650 kb on + strand, within HSERO_RS03565 at 777.864 kb on - strand, within HSERO_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 773,977 - HSERO_RS03555 0.43 -1.2 774,175 + HSERO_RS03555 0.59 -0.9 774,358 + HSERO_RS03555 0.73 -1.1 774,910 + -1.3 774,960 + +0.8 775,034 + +0.1 775,051 + +0.1 775,070 + -0.8 775,070 + -0.3 775,073 - -0.2 775,172 - HSERO_RS03560 0.12 -0.5 775,184 + HSERO_RS03560 0.12 +0.4 775,184 + HSERO_RS03560 0.12 -1.2 775,439 - HSERO_RS03560 0.24 +0.2 775,543 - -1.5 775,565 + HSERO_RS03560 0.30 +0.2 775,571 - HSERO_RS03560 0.30 +0.5 775,686 + HSERO_RS03560 0.36 +1.6 775,745 + HSERO_RS03560 0.38 -0.2 775,831 - HSERO_RS03560 0.43 -0.5 776,034 + HSERO_RS03560 0.52 -1.0 776,044 + HSERO_RS03560 0.53 +0.4 776,450 - HSERO_RS03560 0.72 -0.0 776,650 - HSERO_RS03560 0.81 +1.6 776,751 - HSERO_RS03560 0.86 -0.0 776,757 - HSERO_RS03560 0.86 -0.2 776,979 + -0.4 776,995 + -0.2 777,179 + -0.4 777,344 + HSERO_RS03565 0.25 -0.4 777,419 + HSERO_RS03565 0.33 +0.3 777,438 + HSERO_RS03565 0.35 +0.2 777,439 + HSERO_RS03565 0.35 +0.9 777,506 - HSERO_RS03565 0.42 -0.8 777,650 + HSERO_RS03565 0.56 -0.3 777,864 - HSERO_RS03565 0.78 +0.2
Or see this region's nucleotide sequence