Experiment: D-Xylose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06770 and HMPREF1058_RS06765 are separated by 11 nucleotides HMPREF1058_RS06765 and HMPREF1058_RS06760 overlap by 4 nucleotides
HMPREF1058_RS06770: HMPREF1058_RS06770 - glycosyltransferase family 4 protein, at 400,176 to 401,324
_RS06770
HMPREF1058_RS06765: HMPREF1058_RS06765 - glycosyltransferase family 1 protein, at 401,336 to 402,469
_RS06765
HMPREF1058_RS06760: HMPREF1058_RS06760 - glycosyltransferase family 4 protein, at 402,466 to 403,617
_RS06760
Position (kb) 401
402
403 Strain fitness (log2 ratio) -1
0
1
2 at 400.360 kb on - strand, within HMPREF1058_RS06770 at 400.507 kb on + strand, within HMPREF1058_RS06770 at 400.511 kb on + strand, within HMPREF1058_RS06770 at 400.586 kb on + strand, within HMPREF1058_RS06770 at 400.586 kb on + strand, within HMPREF1058_RS06770 at 400.607 kb on - strand, within HMPREF1058_RS06770 at 400.611 kb on - strand, within HMPREF1058_RS06770 at 400.611 kb on - strand, within HMPREF1058_RS06770 at 400.611 kb on - strand, within HMPREF1058_RS06770 at 400.615 kb on - strand, within HMPREF1058_RS06770 at 400.767 kb on - strand, within HMPREF1058_RS06770 at 400.869 kb on + strand, within HMPREF1058_RS06770 at 400.925 kb on - strand, within HMPREF1058_RS06770 at 400.938 kb on + strand, within HMPREF1058_RS06770 at 400.938 kb on + strand, within HMPREF1058_RS06770 at 400.938 kb on + strand, within HMPREF1058_RS06770 at 400.939 kb on - strand, within HMPREF1058_RS06770 at 400.939 kb on - strand, within HMPREF1058_RS06770 at 400.939 kb on - strand, within HMPREF1058_RS06770 at 401.067 kb on + strand, within HMPREF1058_RS06770 at 401.067 kb on + strand, within HMPREF1058_RS06770 at 401.067 kb on + strand, within HMPREF1058_RS06770 at 401.068 kb on - strand, within HMPREF1058_RS06770 at 401.068 kb on - strand, within HMPREF1058_RS06770 at 401.137 kb on - strand, within HMPREF1058_RS06770 at 401.213 kb on + strand at 401.216 kb on - strand at 401.216 kb on - strand at 401.217 kb on + strand at 401.218 kb on - strand at 401.245 kb on + strand at 401.266 kb on - strand at 401.304 kb on - strand at 401.337 kb on + strand at 401.349 kb on - strand at 401.431 kb on + strand at 401.431 kb on - strand at 401.431 kb on - strand at 401.453 kb on - strand, within HMPREF1058_RS06765 at 401.488 kb on + strand, within HMPREF1058_RS06765 at 401.491 kb on - strand, within HMPREF1058_RS06765 at 401.567 kb on + strand, within HMPREF1058_RS06765 at 401.649 kb on - strand, within HMPREF1058_RS06765 at 401.695 kb on + strand, within HMPREF1058_RS06765 at 401.711 kb on - strand, within HMPREF1058_RS06765 at 401.711 kb on - strand, within HMPREF1058_RS06765 at 401.764 kb on + strand, within HMPREF1058_RS06765 at 401.764 kb on + strand, within HMPREF1058_RS06765 at 401.764 kb on + strand, within HMPREF1058_RS06765 at 401.856 kb on + strand, within HMPREF1058_RS06765 at 401.856 kb on + strand, within HMPREF1058_RS06765 at 401.861 kb on + strand, within HMPREF1058_RS06765 at 401.877 kb on - strand, within HMPREF1058_RS06765 at 401.879 kb on + strand, within HMPREF1058_RS06765 at 401.880 kb on - strand, within HMPREF1058_RS06765 at 401.962 kb on + strand, within HMPREF1058_RS06765 at 402.088 kb on - strand, within HMPREF1058_RS06765 at 402.106 kb on - strand, within HMPREF1058_RS06765 at 402.109 kb on + strand, within HMPREF1058_RS06765 at 402.109 kb on + strand, within HMPREF1058_RS06765 at 402.109 kb on + strand, within HMPREF1058_RS06765 at 402.109 kb on + strand, within HMPREF1058_RS06765 at 402.110 kb on - strand, within HMPREF1058_RS06765 at 402.110 kb on - strand, within HMPREF1058_RS06765 at 402.125 kb on + strand, within HMPREF1058_RS06765 at 402.197 kb on + strand, within HMPREF1058_RS06765 at 402.198 kb on - strand, within HMPREF1058_RS06765 at 402.198 kb on - strand, within HMPREF1058_RS06765 at 402.240 kb on - strand, within HMPREF1058_RS06765 at 402.299 kb on + strand, within HMPREF1058_RS06765 at 402.303 kb on - strand, within HMPREF1058_RS06765 at 402.351 kb on + strand, within HMPREF1058_RS06765 at 402.352 kb on - strand, within HMPREF1058_RS06765 at 402.352 kb on - strand, within HMPREF1058_RS06765 at 402.456 kb on + strand at 402.457 kb on - strand at 402.776 kb on + strand, within HMPREF1058_RS06760 at 402.776 kb on + strand, within HMPREF1058_RS06760 at 402.779 kb on - strand, within HMPREF1058_RS06760 at 402.844 kb on + strand, within HMPREF1058_RS06760 at 402.844 kb on + strand, within HMPREF1058_RS06760 at 402.846 kb on + strand, within HMPREF1058_RS06760 at 402.847 kb on - strand, within HMPREF1058_RS06760 at 402.909 kb on + strand, within HMPREF1058_RS06760 at 402.984 kb on - strand, within HMPREF1058_RS06760 at 402.984 kb on - strand, within HMPREF1058_RS06760 at 402.984 kb on - strand, within HMPREF1058_RS06760 at 403.223 kb on + strand, within HMPREF1058_RS06760 at 403.237 kb on - strand, within HMPREF1058_RS06760 at 403.362 kb on - strand, within HMPREF1058_RS06760 at 403.362 kb on - strand, within HMPREF1058_RS06760 at 403.389 kb on - strand, within HMPREF1058_RS06760 at 403.397 kb on - strand, within HMPREF1058_RS06760
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 20 mM (C) remove 400,360 - HMPREF1058_RS06770 0.16 +0.6 400,507 + HMPREF1058_RS06770 0.29 -0.8 400,511 + HMPREF1058_RS06770 0.29 +0.6 400,586 + HMPREF1058_RS06770 0.36 +0.7 400,586 + HMPREF1058_RS06770 0.36 -0.4 400,607 - HMPREF1058_RS06770 0.38 -1.0 400,611 - HMPREF1058_RS06770 0.38 -0.3 400,611 - HMPREF1058_RS06770 0.38 -0.6 400,611 - HMPREF1058_RS06770 0.38 +0.9 400,615 - HMPREF1058_RS06770 0.38 -0.3 400,767 - HMPREF1058_RS06770 0.51 +0.4 400,869 + HMPREF1058_RS06770 0.60 +0.4 400,925 - HMPREF1058_RS06770 0.65 -1.7 400,938 + HMPREF1058_RS06770 0.66 -0.4 400,938 + HMPREF1058_RS06770 0.66 -0.3 400,938 + HMPREF1058_RS06770 0.66 -0.6 400,939 - HMPREF1058_RS06770 0.66 +0.2 400,939 - HMPREF1058_RS06770 0.66 -0.6 400,939 - HMPREF1058_RS06770 0.66 -0.0 401,067 + HMPREF1058_RS06770 0.78 -1.7 401,067 + HMPREF1058_RS06770 0.78 -0.3 401,067 + HMPREF1058_RS06770 0.78 +0.1 401,068 - HMPREF1058_RS06770 0.78 +1.5 401,068 - HMPREF1058_RS06770 0.78 -0.2 401,137 - HMPREF1058_RS06770 0.84 -0.7 401,213 + +0.0 401,216 - +0.1 401,216 - +0.4 401,217 + -0.1 401,218 - -0.2 401,245 + +0.3 401,266 - +0.1 401,304 - +0.4 401,337 + -0.3 401,349 - -0.6 401,431 + -0.5 401,431 - +1.1 401,431 - +0.4 401,453 - HMPREF1058_RS06765 0.10 +0.9 401,488 + HMPREF1058_RS06765 0.13 -0.9 401,491 - HMPREF1058_RS06765 0.14 +1.6 401,567 + HMPREF1058_RS06765 0.20 +0.5 401,649 - HMPREF1058_RS06765 0.28 +1.9 401,695 + HMPREF1058_RS06765 0.32 -0.1 401,711 - HMPREF1058_RS06765 0.33 +1.4 401,711 - HMPREF1058_RS06765 0.33 -0.4 401,764 + HMPREF1058_RS06765 0.38 +0.5 401,764 + HMPREF1058_RS06765 0.38 +0.3 401,764 + HMPREF1058_RS06765 0.38 -0.6 401,856 + HMPREF1058_RS06765 0.46 +0.7 401,856 + HMPREF1058_RS06765 0.46 -0.1 401,861 + HMPREF1058_RS06765 0.46 -0.4 401,877 - HMPREF1058_RS06765 0.48 -0.9 401,879 + HMPREF1058_RS06765 0.48 -0.2 401,880 - HMPREF1058_RS06765 0.48 +2.0 401,962 + HMPREF1058_RS06765 0.55 +0.8 402,088 - HMPREF1058_RS06765 0.66 +0.1 402,106 - HMPREF1058_RS06765 0.68 +0.2 402,109 + HMPREF1058_RS06765 0.68 -0.0 402,109 + HMPREF1058_RS06765 0.68 -0.3 402,109 + HMPREF1058_RS06765 0.68 +1.1 402,109 + HMPREF1058_RS06765 0.68 +1.3 402,110 - HMPREF1058_RS06765 0.68 +0.3 402,110 - HMPREF1058_RS06765 0.68 +1.2 402,125 + HMPREF1058_RS06765 0.70 +0.0 402,197 + HMPREF1058_RS06765 0.76 -0.4 402,198 - HMPREF1058_RS06765 0.76 +0.8 402,198 - HMPREF1058_RS06765 0.76 +1.2 402,240 - HMPREF1058_RS06765 0.80 +0.4 402,299 + HMPREF1058_RS06765 0.85 -0.3 402,303 - HMPREF1058_RS06765 0.85 +0.4 402,351 + HMPREF1058_RS06765 0.90 +0.3 402,352 - HMPREF1058_RS06765 0.90 +2.3 402,352 - HMPREF1058_RS06765 0.90 +0.9 402,456 + -0.2 402,457 - +0.4 402,776 + HMPREF1058_RS06760 0.27 +0.3 402,776 + HMPREF1058_RS06760 0.27 -0.1 402,779 - HMPREF1058_RS06760 0.27 +0.1 402,844 + HMPREF1058_RS06760 0.33 -0.5 402,844 + HMPREF1058_RS06760 0.33 -0.3 402,846 + HMPREF1058_RS06760 0.33 +0.2 402,847 - HMPREF1058_RS06760 0.33 +0.0 402,909 + HMPREF1058_RS06760 0.38 +0.5 402,984 - HMPREF1058_RS06760 0.45 +0.2 402,984 - HMPREF1058_RS06760 0.45 +0.2 402,984 - HMPREF1058_RS06760 0.45 +0.2 403,223 + HMPREF1058_RS06760 0.66 +0.0 403,237 - HMPREF1058_RS06760 0.67 -1.0 403,362 - HMPREF1058_RS06760 0.78 -0.1 403,362 - HMPREF1058_RS06760 0.78 -1.0 403,389 - HMPREF1058_RS06760 0.80 -0.1 403,397 - HMPREF1058_RS06760 0.81 +0.6
Or see this region's nucleotide sequence