Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3509

Experiment: Choline chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3508 and Ga0059261_3509 are separated by 1 nucleotidesGa0059261_3509 and Ga0059261_3510 are separated by 228 nucleotidesGa0059261_3510 and Ga0059261_3511 overlap by 4 nucleotides Ga0059261_3508: Ga0059261_3508 - 7-keto-8-aminopelargonate synthetase and related enzymes, at 3,631,619 to 3,632,872 _3508 Ga0059261_3509: Ga0059261_3509 - Acyl carrier protein, at 3,632,874 to 3,633,119 _3509 Ga0059261_3510: Ga0059261_3510 - Sortase and related acyltransferases, at 3,633,348 to 3,633,845 _3510 Ga0059261_3511: Ga0059261_3511 - Nucleoside-diphosphate-sugar epimerases, at 3,633,842 to 3,634,747 _3511 Position (kb) 3632 3633 3634Strain fitness (log2 ratio) -2 -1 0 1 2at 3633.131 kb on - strandat 3633.285 kb on + strandat 3633.606 kb on - strand, within Ga0059261_3510at 3633.668 kb on + strand, within Ga0059261_3510at 3633.668 kb on + strand, within Ga0059261_3510at 3633.669 kb on - strand, within Ga0059261_3510at 3633.669 kb on - strandat 3633.721 kb on + strand, within Ga0059261_3510at 3633.722 kb on - strand, within Ga0059261_3510at 3633.748 kb on + strand, within Ga0059261_3510at 3633.748 kb on + strand, within Ga0059261_3510at 3633.748 kb on + strand, within Ga0059261_3510at 3633.748 kb on + strand, within Ga0059261_3510at 3633.748 kb on + strand, within Ga0059261_3510at 3633.749 kb on - strand, within Ga0059261_3510at 3633.749 kb on - strand, within Ga0059261_3510at 3633.754 kb on + strand, within Ga0059261_3510at 3633.754 kb on + strand, within Ga0059261_3510at 3633.754 kb on + strand, within Ga0059261_3510at 3633.754 kb on + strand, within Ga0059261_3510at 3633.754 kb on + strand, within Ga0059261_3510at 3633.754 kb on + strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strandat 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510at 3633.755 kb on - strand, within Ga0059261_3510

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 10 mM
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3,633,131 - -1.0
3,633,285 + -0.2
3,633,606 - Ga0059261_3510 0.52 -0.4
3,633,668 + Ga0059261_3510 0.64 -1.8
3,633,668 + Ga0059261_3510 0.64 -0.5
3,633,669 - Ga0059261_3510 0.64 +0.2
3,633,669 - +0.8
3,633,721 + Ga0059261_3510 0.75 +0.3
3,633,722 - Ga0059261_3510 0.75 -0.8
3,633,748 + Ga0059261_3510 0.80 +0.3
3,633,748 + Ga0059261_3510 0.80 +2.0
3,633,748 + Ga0059261_3510 0.80 +0.8
3,633,748 + Ga0059261_3510 0.80 +0.3
3,633,748 + Ga0059261_3510 0.80 +0.1
3,633,749 - Ga0059261_3510 0.81 +0.8
3,633,749 - Ga0059261_3510 0.81 -0.7
3,633,754 + Ga0059261_3510 0.82 +0.1
3,633,754 + Ga0059261_3510 0.82 -0.2
3,633,754 + Ga0059261_3510 0.82 +0.2
3,633,754 + Ga0059261_3510 0.82 +0.6
3,633,754 + Ga0059261_3510 0.82 -0.2
3,633,754 + Ga0059261_3510 0.82 -0.9
3,633,755 - Ga0059261_3510 0.82 -0.8
3,633,755 - Ga0059261_3510 0.82 -0.1
3,633,755 - Ga0059261_3510 0.82 +0.3
3,633,755 - Ga0059261_3510 0.82 +0.0
3,633,755 - -0.8
3,633,755 - Ga0059261_3510 0.82 -0.4
3,633,755 - Ga0059261_3510 0.82 -0.2
3,633,755 - Ga0059261_3510 0.82 -0.3
3,633,755 - Ga0059261_3510 0.82 -0.5
3,633,755 - Ga0059261_3510 0.82 +0.2
3,633,755 - Ga0059261_3510 0.82 +0.2
3,633,755 - Ga0059261_3510 0.82 +0.0
3,633,755 - Ga0059261_3510 0.82 -0.5

Or see this region's nucleotide sequence