Experiment: Choline chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0274 and Ga0059261_0275 are separated by 632 nucleotides Ga0059261_0275 and Ga0059261_0276 are separated by 43 nucleotides Ga0059261_0276 and Ga0059261_0277 are separated by 88 nucleotides
Ga0059261_0274: Ga0059261_0274 - transcriptional regulator, TraR/DksA family, at 259,752 to 260,216
_0274
Ga0059261_0275: Ga0059261_0275 - hypothetical protein, at 260,849 to 261,517
_0275
Ga0059261_0276: Ga0059261_0276 - Protein required for attachment to host cells, at 261,561 to 262,004
_0276
Ga0059261_0277: Ga0059261_0277 - seryl-tRNA synthetase (EC 6.1.1.11), at 262,093 to 263,370
_0277
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.874 kb on - strand, within Ga0059261_0274 at 259.874 kb on - strand, within Ga0059261_0274 at 259.879 kb on + strand, within Ga0059261_0274 at 259.879 kb on + strand, within Ga0059261_0274 at 259.880 kb on - strand, within Ga0059261_0274 at 260.025 kb on + strand, within Ga0059261_0274 at 260.025 kb on + strand, within Ga0059261_0274 at 260.025 kb on + strand, within Ga0059261_0274 at 260.025 kb on + strand, within Ga0059261_0274 at 260.026 kb on - strand, within Ga0059261_0274 at 260.026 kb on - strand, within Ga0059261_0274 at 260.026 kb on - strand, within Ga0059261_0274 at 260.095 kb on + strand, within Ga0059261_0274 at 260.095 kb on + strand, within Ga0059261_0274 at 260.145 kb on + strand, within Ga0059261_0274 at 260.146 kb on - strand, within Ga0059261_0274 at 260.203 kb on + strand at 260.203 kb on + strand at 260.282 kb on - strand at 260.282 kb on - strand at 260.282 kb on - strand at 260.282 kb on - strand at 260.283 kb on + strand at 260.283 kb on + strand at 260.283 kb on + strand at 260.283 kb on + strand at 260.284 kb on - strand at 260.284 kb on - strand at 260.284 kb on - strand at 260.284 kb on - strand at 260.458 kb on + strand at 260.459 kb on - strand at 260.459 kb on - strand at 260.492 kb on + strand at 260.492 kb on + strand at 260.512 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.534 kb on - strand at 260.553 kb on + strand at 260.612 kb on - strand at 260.612 kb on - strand at 260.612 kb on - strand at 260.649 kb on - strand at 260.649 kb on - strand at 260.730 kb on + strand at 260.730 kb on + strand at 260.730 kb on + strand at 260.730 kb on + strand at 260.730 kb on + strand at 260.730 kb on + strand at 260.730 kb on + strand at 260.730 kb on + strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 260.731 kb on - strand at 261.153 kb on - strand, within Ga0059261_0275 at 261.602 kb on + strand at 261.602 kb on + strand at 261.602 kb on + strand at 261.602 kb on + strand at 261.603 kb on - strand at 261.603 kb on - strand at 261.603 kb on - strand at 261.603 kb on - strand at 261.649 kb on - strand, within Ga0059261_0276 at 261.649 kb on - strand, within Ga0059261_0276 at 261.661 kb on + strand, within Ga0059261_0276 at 261.662 kb on - strand, within Ga0059261_0276 at 261.808 kb on + strand, within Ga0059261_0276 at 261.809 kb on - strand, within Ga0059261_0276 at 261.816 kb on - strand, within Ga0059261_0276 at 262.017 kb on + strand at 262.017 kb on + strand at 262.017 kb on + strand at 262.018 kb on - strand at 262.018 kb on - strand at 262.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 10 mM remove 259,874 - Ga0059261_0274 0.26 +0.6 259,874 - Ga0059261_0274 0.26 -0.3 259,879 + Ga0059261_0274 0.27 -1.1 259,879 + Ga0059261_0274 0.27 -1.1 259,880 - Ga0059261_0274 0.28 -0.5 260,025 + Ga0059261_0274 0.59 -0.2 260,025 + Ga0059261_0274 0.59 +2.4 260,025 + Ga0059261_0274 0.59 -0.1 260,025 + Ga0059261_0274 0.59 -0.5 260,026 - Ga0059261_0274 0.59 -0.6 260,026 - Ga0059261_0274 0.59 +0.2 260,026 - Ga0059261_0274 0.59 +0.1 260,095 + Ga0059261_0274 0.74 +0.4 260,095 + Ga0059261_0274 0.74 -0.2 260,145 + Ga0059261_0274 0.85 +1.0 260,146 - Ga0059261_0274 0.85 +0.5 260,203 + -0.2 260,203 + -0.5 260,282 - -0.0 260,282 - -0.2 260,282 - -0.3 260,282 - +0.5 260,283 + -0.1 260,283 + -1.4 260,283 + +0.2 260,283 + -0.0 260,284 - -0.5 260,284 - +0.8 260,284 - -0.1 260,284 - -0.5 260,458 + +0.0 260,459 - -0.7 260,459 - +0.8 260,492 + +0.3 260,492 + -0.5 260,512 + +0.1 260,533 + +0.9 260,533 + -0.6 260,533 + +0.4 260,533 + +0.2 260,533 + -0.1 260,533 + +0.2 260,534 - +0.2 260,553 + +0.2 260,612 - +0.3 260,612 - +0.1 260,612 - +0.2 260,649 - -0.2 260,649 - +0.9 260,730 + +0.0 260,730 + +0.6 260,730 + +0.6 260,730 + +0.0 260,730 + +0.2 260,730 + -0.8 260,730 + -0.5 260,730 + -0.2 260,731 - -0.8 260,731 - -0.1 260,731 - -0.4 260,731 - -0.0 260,731 - -0.2 260,731 - -0.0 260,731 - -1.8 260,731 - +0.2 260,731 - +1.0 260,731 - +0.2 260,731 - +0.6 260,731 - +0.1 260,731 - +0.8 261,153 - Ga0059261_0275 0.45 +0.3 261,602 + -0.2 261,602 + -0.2 261,602 + -0.3 261,602 + +0.5 261,603 - +0.6 261,603 - -0.4 261,603 - +0.2 261,603 - +0.1 261,649 - Ga0059261_0276 0.20 -0.6 261,649 - Ga0059261_0276 0.20 +0.2 261,661 + Ga0059261_0276 0.23 -0.0 261,662 - Ga0059261_0276 0.23 -0.1 261,808 + Ga0059261_0276 0.56 +0.2 261,809 - Ga0059261_0276 0.56 +0.5 261,816 - Ga0059261_0276 0.57 -0.9 262,017 + -0.1 262,017 + -0.5 262,017 + -0.1 262,018 - -0.2 262,018 - -0.5 262,018 - +0.9
Or see this region's nucleotide sequence