Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0046

Experiment: Choline chloride 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0044 and Ga0059261_0045 are separated by 41 nucleotidesGa0059261_0045 and Ga0059261_0046 are separated by 254 nucleotidesGa0059261_0046 and Ga0059261_0047 are separated by 143 nucleotides Ga0059261_0044: Ga0059261_0044 - two component transcriptional regulator, LytTR family, at 38,442 to 39,182 _0044 Ga0059261_0045: Ga0059261_0045 - hypothetical protein, at 39,224 to 39,559 _0045 Ga0059261_0046: Ga0059261_0046 - hypothetical protein, at 39,814 to 40,041 _0046 Ga0059261_0047: Ga0059261_0047 - Predicted aminopeptidases, at 40,185 to 41,543 _0047 Position (kb) 39 40 41Strain fitness (log2 ratio) -1 0 1 2at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.970 kb on + strand, within Ga0059261_0044at 38.970 kb on + strand, within Ga0059261_0044at 38.971 kb on - strand, within Ga0059261_0044at 38.971 kb on - strand, within Ga0059261_0044at 38.971 kb on - strandat 38.971 kb on - strand, within Ga0059261_0044at 38.971 kb on - strand, within Ga0059261_0044at 38.971 kb on - strand, within Ga0059261_0044at 39.147 kb on + strandat 39.147 kb on + strandat 39.147 kb on + strandat 39.147 kb on + strandat 39.147 kb on + strandat 39.147 kb on + strandat 39.148 kb on - strandat 39.148 kb on - strandat 39.148 kb on - strandat 39.180 kb on + strandat 39.180 kb on + strandat 39.181 kb on - strandat 39.181 kb on - strandat 39.233 kb on + strandat 39.233 kb on + strandat 39.233 kb on + strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.247 kb on + strandat 39.247 kb on + strandat 39.247 kb on + strandat 39.248 kb on - strandat 39.322 kb on + strand, within Ga0059261_0045at 39.463 kb on - strand, within Ga0059261_0045at 39.463 kb on - strand, within Ga0059261_0045at 39.463 kb on - strand, within Ga0059261_0045at 39.611 kb on + strandat 39.611 kb on + strandat 39.611 kb on + strandat 39.611 kb on + strandat 39.612 kb on - strandat 39.612 kb on - strandat 39.635 kb on - strandat 39.648 kb on - strandat 39.648 kb on - strandat 39.648 kb on - strandat 39.730 kb on - strandat 40.321 kb on + strand, within Ga0059261_0047at 40.567 kb on + strand, within Ga0059261_0047at 40.567 kb on + strand, within Ga0059261_0047at 40.567 kb on + strand, within Ga0059261_0047at 40.567 kb on + strand, within Ga0059261_0047at 40.969 kb on - strand, within Ga0059261_0047at 40.970 kb on - strand, within Ga0059261_0047at 40.970 kb on - strand, within Ga0059261_0047

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 10 mM
remove
38,940 + Ga0059261_0044 0.67 -0.8
38,940 + Ga0059261_0044 0.67 -0.4
38,940 + Ga0059261_0044 0.67 +1.0
38,940 + Ga0059261_0044 0.67 +0.4
38,940 + Ga0059261_0044 0.67 -0.5
38,940 + Ga0059261_0044 0.67 +0.6
38,940 + Ga0059261_0044 0.67 -0.5
38,940 + Ga0059261_0044 0.67 -0.0
38,940 + Ga0059261_0044 0.67 +0.0
38,940 + Ga0059261_0044 0.67 -0.9
38,941 - Ga0059261_0044 0.67 +0.1
38,941 - Ga0059261_0044 0.67 -0.2
38,941 - Ga0059261_0044 0.67 +0.4
38,941 - Ga0059261_0044 0.67 +1.0
38,941 - Ga0059261_0044 0.67 +0.5
38,941 - Ga0059261_0044 0.67 -0.2
38,941 - Ga0059261_0044 0.67 +0.2
38,941 - Ga0059261_0044 0.67 -0.6
38,942 + Ga0059261_0044 0.67 -0.5
38,942 + Ga0059261_0044 0.67 -0.5
38,942 + Ga0059261_0044 0.67 +1.6
38,942 + Ga0059261_0044 0.67 +2.0
38,942 + Ga0059261_0044 0.67 -0.2
38,943 - Ga0059261_0044 0.68 +0.2
38,943 - Ga0059261_0044 0.68 +0.7
38,943 - Ga0059261_0044 0.68 -0.1
38,943 - Ga0059261_0044 0.68 -0.2
38,943 - Ga0059261_0044 0.68 +0.2
38,970 + Ga0059261_0044 0.71 -0.2
38,970 + Ga0059261_0044 0.71 -1.0
38,971 - Ga0059261_0044 0.71 -0.2
38,971 - Ga0059261_0044 0.71 +0.1
38,971 - +0.7
38,971 - Ga0059261_0044 0.71 +0.2
38,971 - Ga0059261_0044 0.71 +0.8
38,971 - Ga0059261_0044 0.71 +0.7
39,147 + +0.2
39,147 + -0.1
39,147 + -0.9
39,147 + -0.5
39,147 + -0.4
39,147 + +0.1
39,148 - +0.0
39,148 - +0.7
39,148 - -0.6
39,180 + +0.3
39,180 + -0.4
39,181 - -0.5
39,181 - +0.3
39,233 + -0.1
39,233 + +0.1
39,233 + +0.1
39,234 - +0.2
39,234 - -0.0
39,234 - +0.0
39,234 - -0.1
39,234 - -0.6
39,234 - +0.2
39,234 - +0.5
39,234 - -0.4
39,234 - -0.1
39,234 - +0.1
39,234 - +0.5
39,247 + +0.7
39,247 + -0.6
39,247 + -0.0
39,248 - -0.4
39,322 + Ga0059261_0045 0.29 +0.3
39,463 - Ga0059261_0045 0.71 -0.0
39,463 - Ga0059261_0045 0.71 +0.3
39,463 - Ga0059261_0045 0.71 -0.3
39,611 + +0.4
39,611 + -1.2
39,611 + -1.7
39,611 + -0.4
39,612 - +0.3
39,612 - +0.1
39,635 - -0.2
39,648 - +0.3
39,648 - +0.2
39,648 - -0.3
39,730 - +0.2
40,321 + Ga0059261_0047 0.10 +2.1
40,567 + Ga0059261_0047 0.28 +1.8
40,567 + Ga0059261_0047 0.28 +0.0
40,567 + Ga0059261_0047 0.28 -0.4
40,567 + Ga0059261_0047 0.28 +0.4
40,969 - Ga0059261_0047 0.58 -0.5
40,970 - Ga0059261_0047 0.58 -0.4
40,970 - Ga0059261_0047 0.58 -0.4

Or see this region's nucleotide sequence