Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19335 and BPHYT_RS19340 are separated by 30 nucleotides BPHYT_RS19340 and BPHYT_RS19345 are separated by 219 nucleotides
BPHYT_RS19335: BPHYT_RS19335 - hypothetical protein, at 4,343,027 to 4,344,157
_RS19335
BPHYT_RS19340: BPHYT_RS19340 - L-serine ammonia-lyase (EC 4.3.1.17) <small>(from data)</small>, at 4,344,188 to 4,345,576
_RS19340
BPHYT_RS19345: BPHYT_RS19345 - thiamine pyrophosphate protein, at 4,345,796 to 4,347,514
_RS19345
Position (kb) 4344
4345
4346 Strain fitness (log2 ratio) -1
0
1 at 4343.444 kb on + strand, within BPHYT_RS19335 at 4343.445 kb on - strand, within BPHYT_RS19335 at 4343.445 kb on - strand, within BPHYT_RS19335 at 4343.795 kb on + strand, within BPHYT_RS19335 at 4343.795 kb on + strand, within BPHYT_RS19335 at 4343.796 kb on - strand, within BPHYT_RS19335 at 4344.083 kb on - strand at 4344.167 kb on - strand at 4344.185 kb on + strand at 4344.185 kb on + strand at 4344.185 kb on + strand at 4344.185 kb on + strand at 4344.186 kb on - strand at 4344.338 kb on + strand, within BPHYT_RS19340 at 4344.339 kb on - strand, within BPHYT_RS19340 at 4344.617 kb on + strand, within BPHYT_RS19340 at 4344.618 kb on - strand, within BPHYT_RS19340 at 4344.618 kb on - strand, within BPHYT_RS19340 at 4344.618 kb on - strand, within BPHYT_RS19340 at 4344.664 kb on + strand, within BPHYT_RS19340 at 4344.891 kb on + strand, within BPHYT_RS19340 at 4345.011 kb on - strand, within BPHYT_RS19340 at 4345.106 kb on + strand, within BPHYT_RS19340 at 4345.107 kb on - strand, within BPHYT_RS19340 at 4345.107 kb on - strand, within BPHYT_RS19340 at 4345.109 kb on + strand, within BPHYT_RS19340 at 4345.109 kb on + strand, within BPHYT_RS19340 at 4345.110 kb on - strand, within BPHYT_RS19340 at 4345.110 kb on - strand, within BPHYT_RS19340 at 4345.110 kb on - strand, within BPHYT_RS19340 at 4345.187 kb on + strand, within BPHYT_RS19340 at 4345.187 kb on + strand, within BPHYT_RS19340 at 4345.187 kb on + strand, within BPHYT_RS19340 at 4345.187 kb on + strand, within BPHYT_RS19340 at 4345.188 kb on - strand, within BPHYT_RS19340 at 4345.188 kb on - strand, within BPHYT_RS19340 at 4345.188 kb on - strand, within BPHYT_RS19340 at 4345.463 kb on + strand at 4345.526 kb on + strand at 4345.526 kb on + strand at 4345.597 kb on + strand at 4345.598 kb on - strand at 4345.654 kb on - strand at 4345.707 kb on + strand at 4345.708 kb on - strand at 4345.708 kb on - strand at 4345.970 kb on - strand, within BPHYT_RS19345 at 4345.970 kb on - strand, within BPHYT_RS19345 at 4346.102 kb on + strand, within BPHYT_RS19345 at 4346.103 kb on - strand, within BPHYT_RS19345 at 4346.103 kb on - strand, within BPHYT_RS19345 at 4346.255 kb on + strand, within BPHYT_RS19345 at 4346.304 kb on + strand, within BPHYT_RS19345 at 4346.422 kb on - strand, within BPHYT_RS19345 at 4346.422 kb on - strand, within BPHYT_RS19345
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,343,444 + BPHYT_RS19335 0.37 -0.3 4,343,445 - BPHYT_RS19335 0.37 -0.1 4,343,445 - BPHYT_RS19335 0.37 -0.2 4,343,795 + BPHYT_RS19335 0.68 -0.7 4,343,795 + BPHYT_RS19335 0.68 +0.3 4,343,796 - BPHYT_RS19335 0.68 +0.9 4,344,083 - +0.8 4,344,167 - +0.2 4,344,185 + -0.2 4,344,185 + +0.2 4,344,185 + +1.1 4,344,185 + -0.3 4,344,186 - -0.4 4,344,338 + BPHYT_RS19340 0.11 -0.1 4,344,339 - BPHYT_RS19340 0.11 +0.3 4,344,617 + BPHYT_RS19340 0.31 -1.0 4,344,618 - BPHYT_RS19340 0.31 +0.7 4,344,618 - BPHYT_RS19340 0.31 +0.0 4,344,618 - BPHYT_RS19340 0.31 -0.5 4,344,664 + BPHYT_RS19340 0.34 +1.3 4,344,891 + BPHYT_RS19340 0.51 +0.6 4,345,011 - BPHYT_RS19340 0.59 -0.5 4,345,106 + BPHYT_RS19340 0.66 +0.3 4,345,107 - BPHYT_RS19340 0.66 -0.4 4,345,107 - BPHYT_RS19340 0.66 -1.0 4,345,109 + BPHYT_RS19340 0.66 -1.2 4,345,109 + BPHYT_RS19340 0.66 -0.0 4,345,110 - BPHYT_RS19340 0.66 -0.1 4,345,110 - BPHYT_RS19340 0.66 +0.4 4,345,110 - BPHYT_RS19340 0.66 +0.4 4,345,187 + BPHYT_RS19340 0.72 +1.7 4,345,187 + BPHYT_RS19340 0.72 -0.7 4,345,187 + BPHYT_RS19340 0.72 -1.1 4,345,187 + BPHYT_RS19340 0.72 -0.0 4,345,188 - BPHYT_RS19340 0.72 -0.3 4,345,188 - BPHYT_RS19340 0.72 +0.0 4,345,188 - BPHYT_RS19340 0.72 +0.0 4,345,463 + +0.3 4,345,526 + -0.3 4,345,526 + -0.2 4,345,597 + -0.2 4,345,598 - +0.1 4,345,654 - +0.3 4,345,707 + +0.3 4,345,708 - +0.2 4,345,708 - +0.1 4,345,970 - BPHYT_RS19345 0.10 +0.3 4,345,970 - BPHYT_RS19345 0.10 +0.4 4,346,102 + BPHYT_RS19345 0.18 +0.7 4,346,103 - BPHYT_RS19345 0.18 +0.1 4,346,103 - BPHYT_RS19345 0.18 +0.2 4,346,255 + BPHYT_RS19345 0.27 -0.7 4,346,304 + BPHYT_RS19345 0.30 +0.0 4,346,422 - BPHYT_RS19345 0.36 +0.2 4,346,422 - BPHYT_RS19345 0.36 -0.5
Or see this region's nucleotide sequence