Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18435 and BPHYT_RS18440 are separated by 169 nucleotides BPHYT_RS18440 and BPHYT_RS18445 are separated by 199 nucleotides BPHYT_RS18445 and BPHYT_RS18450 are separated by 75 nucleotides
BPHYT_RS18435: BPHYT_RS18435 - hypothetical protein, at 4,144,001 to 4,144,981
_RS18435
BPHYT_RS18440: BPHYT_RS18440 - MFS transporter, at 4,145,151 to 4,145,663
_RS18440
BPHYT_RS18445: BPHYT_RS18445 - hypothetical protein, at 4,145,863 to 4,146,114
_RS18445
BPHYT_RS18450: BPHYT_RS18450 - voltage-gated chloride channel protein, at 4,146,190 to 4,147,500
_RS18450
Position (kb) 4145
4146
4147 Strain fitness (log2 ratio) -1
0
1
2
3 at 4144.904 kb on + strand at 4144.969 kb on + strand at 4144.970 kb on - strand at 4145.078 kb on + strand at 4145.078 kb on + strand at 4145.078 kb on + strand at 4145.079 kb on - strand at 4145.458 kb on - strand, within BPHYT_RS18440 at 4145.506 kb on - strand, within BPHYT_RS18440 at 4145.506 kb on - strand, within BPHYT_RS18440 at 4145.559 kb on - strand, within BPHYT_RS18440 at 4145.565 kb on + strand, within BPHYT_RS18440 at 4145.566 kb on - strand, within BPHYT_RS18440 at 4145.686 kb on + strand at 4145.765 kb on - strand at 4145.889 kb on + strand, within BPHYT_RS18445 at 4145.890 kb on - strand, within BPHYT_RS18445 at 4145.979 kb on - strand, within BPHYT_RS18445 at 4145.979 kb on - strand, within BPHYT_RS18445 at 4145.979 kb on - strand, within BPHYT_RS18445 at 4146.126 kb on - strand at 4146.126 kb on - strand at 4146.165 kb on - strand at 4146.312 kb on - strand at 4146.315 kb on + strand at 4146.315 kb on + strand at 4146.316 kb on - strand at 4146.338 kb on + strand, within BPHYT_RS18450 at 4146.338 kb on + strand, within BPHYT_RS18450 at 4146.365 kb on + strand, within BPHYT_RS18450 at 4146.365 kb on + strand, within BPHYT_RS18450 at 4146.365 kb on + strand, within BPHYT_RS18450 at 4146.365 kb on + strand, within BPHYT_RS18450 at 4146.365 kb on + strand, within BPHYT_RS18450 at 4146.365 kb on + strand, within BPHYT_RS18450 at 4146.417 kb on + strand, within BPHYT_RS18450 at 4146.418 kb on - strand, within BPHYT_RS18450 at 4146.527 kb on + strand, within BPHYT_RS18450 at 4146.527 kb on + strand, within BPHYT_RS18450 at 4146.528 kb on - strand, within BPHYT_RS18450 at 4146.573 kb on + strand, within BPHYT_RS18450 at 4146.574 kb on - strand, within BPHYT_RS18450 at 4146.665 kb on + strand, within BPHYT_RS18450 at 4146.665 kb on + strand, within BPHYT_RS18450 at 4146.666 kb on - strand, within BPHYT_RS18450 at 4146.679 kb on - strand, within BPHYT_RS18450 at 4146.700 kb on + strand, within BPHYT_RS18450 at 4146.700 kb on + strand, within BPHYT_RS18450 at 4146.700 kb on + strand, within BPHYT_RS18450 at 4146.796 kb on - strand, within BPHYT_RS18450 at 4146.879 kb on - strand, within BPHYT_RS18450 at 4146.959 kb on + strand, within BPHYT_RS18450 at 4146.997 kb on + strand, within BPHYT_RS18450 at 4147.057 kb on + strand, within BPHYT_RS18450 at 4147.102 kb on + strand, within BPHYT_RS18450
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,144,904 + -0.0 4,144,969 + -1.2 4,144,970 - +0.9 4,145,078 + -1.1 4,145,078 + -0.3 4,145,078 + +0.1 4,145,079 - +0.1 4,145,458 - BPHYT_RS18440 0.60 -0.6 4,145,506 - BPHYT_RS18440 0.69 -0.7 4,145,506 - BPHYT_RS18440 0.69 -0.1 4,145,559 - BPHYT_RS18440 0.80 -0.9 4,145,565 + BPHYT_RS18440 0.81 +0.3 4,145,566 - BPHYT_RS18440 0.81 +0.1 4,145,686 + -0.1 4,145,765 - +0.4 4,145,889 + BPHYT_RS18445 0.10 -0.1 4,145,890 - BPHYT_RS18445 0.11 +0.4 4,145,979 - BPHYT_RS18445 0.46 -0.1 4,145,979 - BPHYT_RS18445 0.46 -0.0 4,145,979 - BPHYT_RS18445 0.46 -0.2 4,146,126 - +0.0 4,146,126 - -0.2 4,146,165 - -0.4 4,146,312 - -0.4 4,146,315 + +0.7 4,146,315 + +0.3 4,146,316 - +0.7 4,146,338 + BPHYT_RS18450 0.11 -0.2 4,146,338 + BPHYT_RS18450 0.11 +1.4 4,146,365 + BPHYT_RS18450 0.13 -1.2 4,146,365 + BPHYT_RS18450 0.13 -1.4 4,146,365 + BPHYT_RS18450 0.13 +0.2 4,146,365 + BPHYT_RS18450 0.13 -0.0 4,146,365 + BPHYT_RS18450 0.13 -0.4 4,146,365 + BPHYT_RS18450 0.13 +1.1 4,146,417 + BPHYT_RS18450 0.17 +0.1 4,146,418 - BPHYT_RS18450 0.17 +0.9 4,146,527 + BPHYT_RS18450 0.26 -0.4 4,146,527 + BPHYT_RS18450 0.26 +0.2 4,146,528 - BPHYT_RS18450 0.26 +0.1 4,146,573 + BPHYT_RS18450 0.29 -0.2 4,146,574 - BPHYT_RS18450 0.29 -0.6 4,146,665 + BPHYT_RS18450 0.36 +0.6 4,146,665 + BPHYT_RS18450 0.36 +0.0 4,146,666 - BPHYT_RS18450 0.36 -0.8 4,146,679 - BPHYT_RS18450 0.37 -0.1 4,146,700 + BPHYT_RS18450 0.39 -0.4 4,146,700 + BPHYT_RS18450 0.39 +2.9 4,146,700 + BPHYT_RS18450 0.39 -0.8 4,146,796 - BPHYT_RS18450 0.46 +0.1 4,146,879 - BPHYT_RS18450 0.53 -0.8 4,146,959 + BPHYT_RS18450 0.59 -0.1 4,146,997 + BPHYT_RS18450 0.62 +0.1 4,147,057 + BPHYT_RS18450 0.66 +0.0 4,147,102 + BPHYT_RS18450 0.70 +0.2
Or see this region's nucleotide sequence