Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12410

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12400 and BPHYT_RS12405 are separated by 146 nucleotidesBPHYT_RS12405 and BPHYT_RS12410 are separated by 182 nucleotidesBPHYT_RS12410 and BPHYT_RS12415 are separated by 385 nucleotides BPHYT_RS12400: BPHYT_RS12400 - amidohydrolase 2, at 2,827,492 to 2,828,403 _RS12400 BPHYT_RS12405: BPHYT_RS12405 - tRNA-Ser, at 2,828,550 to 2,828,643 _RS12405 BPHYT_RS12410: BPHYT_RS12410 - aspartate kinase, at 2,828,826 to 2,830,076 _RS12410 BPHYT_RS12415: BPHYT_RS12415 - tRNA(Ile)-lysidine synthetase, at 2,830,462 to 2,831,907 _RS12415 Position (kb) 2828 2829 2830 2831Strain fitness (log2 ratio) -1 0 1at 2828.268 kb on + strand, within BPHYT_RS12400at 2828.268 kb on + strand, within BPHYT_RS12400at 2828.269 kb on - strand, within BPHYT_RS12400at 2828.309 kb on - strand, within BPHYT_RS12400at 2828.309 kb on - strand, within BPHYT_RS12400at 2828.318 kb on - strandat 2828.470 kb on + strandat 2828.764 kb on - strandat 2828.803 kb on - strandat 2830.318 kb on - strandat 2830.416 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,828,268 + BPHYT_RS12400 0.85 -0.0
2,828,268 + BPHYT_RS12400 0.85 -0.9
2,828,269 - BPHYT_RS12400 0.85 -0.6
2,828,309 - BPHYT_RS12400 0.90 +0.8
2,828,309 - BPHYT_RS12400 0.90 -0.9
2,828,318 - -0.2
2,828,470 + +0.7
2,828,764 - -0.0
2,828,803 - +0.0
2,830,318 - -0.6
2,830,416 - -0.2

Or see this region's nucleotide sequence