Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04260 and BPHYT_RS04265 are separated by 469 nucleotides BPHYT_RS04265 and BPHYT_RS04270 are separated by 10 nucleotides BPHYT_RS04270 and BPHYT_RS04275 overlap by 16 nucleotides
BPHYT_RS04260: BPHYT_RS04260 - GDP-6-deoxy-D-lyxo-4-hexulose reductase, at 975,980 to 976,891
_RS04260
BPHYT_RS04265: BPHYT_RS04265 - dTDP-glucose 4,6-dehydratase, at 977,361 to 978,422
_RS04265
BPHYT_RS04270: BPHYT_RS04270 - glucose-1-phosphate thymidylyltransferase, at 978,433 to 979,326
_RS04270
BPHYT_RS04275: BPHYT_RS04275 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 979,311 to 979,862
_RS04275
Position (kb) 977
978
979 Strain fitness (log2 ratio) -1
0
1 at 976.496 kb on + strand, within BPHYT_RS04260 at 976.497 kb on - strand, within BPHYT_RS04260 at 976.498 kb on + strand, within BPHYT_RS04260 at 976.499 kb on - strand, within BPHYT_RS04260 at 976.619 kb on + strand, within BPHYT_RS04260 at 976.634 kb on + strand, within BPHYT_RS04260 at 976.634 kb on + strand, within BPHYT_RS04260 at 976.635 kb on - strand, within BPHYT_RS04260 at 976.864 kb on + strand at 976.889 kb on + strand at 977.048 kb on + strand at 977.187 kb on + strand at 977.187 kb on + strand at 977.209 kb on + strand at 977.225 kb on + strand at 977.225 kb on + strand at 977.225 kb on + strand at 977.226 kb on - strand at 977.347 kb on + strand at 977.347 kb on + strand at 978.381 kb on + strand at 978.405 kb on + strand at 978.405 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 976,496 + BPHYT_RS04260 0.57 +0.1 976,497 - BPHYT_RS04260 0.57 -0.2 976,498 + BPHYT_RS04260 0.57 -0.4 976,499 - BPHYT_RS04260 0.57 -0.6 976,619 + BPHYT_RS04260 0.70 +0.8 976,634 + BPHYT_RS04260 0.72 -0.1 976,634 + BPHYT_RS04260 0.72 -0.1 976,635 - BPHYT_RS04260 0.72 -0.2 976,864 + +0.5 976,889 + +0.1 977,048 + -0.1 977,187 + -0.2 977,187 + +0.0 977,209 + -0.3 977,225 + -0.2 977,225 + -0.6 977,225 + +0.6 977,226 - -0.4 977,347 + +0.4 977,347 + +0.1 978,381 + +1.4 978,405 + -0.3 978,405 + -0.4
Or see this region's nucleotide sequence