Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02218 and SMc02206 are separated by 49 nucleotides SMc02206 and SMc02219 overlap by 61 nucleotides SMc02219 and SMc02220 are separated by 35 nucleotides SMc02220 and SMc02221 are separated by 78 nucleotides
SMc02218: SMc02218 - 2'-deoxycytidine 5'-triphosphate deaminase, at 580,265 to 581,362
SMc02218
SMc02206: SMc02206 - tRNA-Gly, at 581,412 to 581,486
SMc02206
SMc02219: SMc02219 - amino acid-binding periplasmic protein, at 581,426 to 582,349
SMc02219
SMc02220: SMc02220 - hypothetical protein, at 582,385 to 583,197
SMc02220
SMc02221: SMc02221 - hypothetical protein, at 583,276 to 583,686
SMc02221
Position (kb) 581
582
583 Strain fitness (log2 ratio) -1
0
1 at 581.419 kb on + strand at 582.386 kb on + strand at 582.500 kb on + strand, within SMc02220 at 582.500 kb on + strand, within SMc02220 at 582.501 kb on - strand, within SMc02220 at 582.501 kb on - strand, within SMc02220 at 582.850 kb on + strand, within SMc02220 at 582.850 kb on + strand, within SMc02220 at 582.978 kb on + strand, within SMc02220 at 582.979 kb on - strand, within SMc02220 at 583.030 kb on + strand, within SMc02220 at 583.031 kb on - strand, within SMc02220 at 583.041 kb on + strand, within SMc02220 at 583.042 kb on - strand, within SMc02220 at 583.042 kb on - strand, within SMc02220 at 583.042 kb on - strand, within SMc02220 at 583.190 kb on + strand at 583.190 kb on + strand at 583.233 kb on + strand at 583.234 kb on - strand at 583.234 kb on - strand at 583.234 kb on - strand at 583.277 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 581,419 + -0.4 582,386 + -0.0 582,500 + SMc02220 0.14 -1.0 582,500 + SMc02220 0.14 -0.4 582,501 - SMc02220 0.14 -0.0 582,501 - SMc02220 0.14 +0.2 582,850 + SMc02220 0.57 +0.2 582,850 + SMc02220 0.57 -0.4 582,978 + SMc02220 0.73 -0.1 582,979 - SMc02220 0.73 +0.0 583,030 + SMc02220 0.79 +0.8 583,031 - SMc02220 0.79 -0.3 583,041 + SMc02220 0.81 -0.2 583,042 - SMc02220 0.81 +0.5 583,042 - SMc02220 0.81 +0.2 583,042 - SMc02220 0.81 +0.1 583,190 + -0.1 583,190 + -0.6 583,233 + -0.4 583,234 - -0.2 583,234 - +0.1 583,234 - +0.3 583,277 + -0.1
Or see this region's nucleotide sequence