Strain Fitness in Sinorhizobium meliloti 1021 around SMc01592

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01590 and SMc01591 are separated by 325 nucleotidesSMc01591 and SMc01592 are separated by 192 nucleotidesSMc01592 and SMc01593 are separated by 300 nucleotides SMc01590: SMc01590 - hypothetical protein, at 2,522,971 to 2,523,603 SMc01590 SMc01591: SMc01591 - hypothetical protein, at 2,523,929 to 2,524,195 SMc01591 SMc01592: SMc01592 - transcriptional regulator, at 2,524,388 to 2,524,864 SMc01592 SMc01593: SMc01593 - transcriptional regulator, at 2,525,165 to 2,525,869 SMc01593 Position (kb) 2524 2525Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2523.421 kb on + strand, within SMc01590at 2523.421 kb on + strand, within SMc01590at 2523.421 kb on + strand, within SMc01590at 2523.421 kb on + strand, within SMc01590at 2523.421 kb on + strand, within SMc01590at 2523.421 kb on + strand, within SMc01590at 2523.421 kb on + strand, within SMc01590at 2523.421 kb on + strand, within SMc01590at 2523.421 kb on + strand, within SMc01590at 2523.422 kb on - strand, within SMc01590at 2523.422 kb on - strand, within SMc01590at 2523.422 kb on - strand, within SMc01590at 2523.422 kb on - strand, within SMc01590at 2523.423 kb on + strand, within SMc01590at 2523.423 kb on + strand, within SMc01590at 2523.424 kb on - strand, within SMc01590at 2523.424 kb on - strand, within SMc01590at 2523.451 kb on + strand, within SMc01590at 2523.451 kb on + strand, within SMc01590at 2523.452 kb on - strand, within SMc01590at 2523.456 kb on - strand, within SMc01590at 2523.456 kb on - strand, within SMc01590at 2523.456 kb on - strand, within SMc01590at 2523.532 kb on + strand, within SMc01590at 2523.533 kb on - strand, within SMc01590at 2523.589 kb on + strandat 2523.589 kb on + strandat 2523.589 kb on + strandat 2523.590 kb on - strandat 2523.590 kb on - strandat 2523.696 kb on + strandat 2523.940 kb on - strandat 2523.947 kb on - strandat 2523.947 kb on - strandat 2523.947 kb on - strandat 2523.947 kb on - strandat 2523.952 kb on + strandat 2524.338 kb on + strandat 2524.339 kb on - strandat 2524.339 kb on - strandat 2524.339 kb on - strandat 2524.340 kb on + strandat 2524.340 kb on + strandat 2524.341 kb on - strandat 2524.341 kb on - strandat 2524.341 kb on - strandat 2524.380 kb on - strandat 2524.416 kb on + strandat 2524.417 kb on - strandat 2524.668 kb on - strand, within SMc01592at 2524.669 kb on + strand, within SMc01592at 2524.716 kb on - strand, within SMc01592at 2524.716 kb on - strand, within SMc01592at 2524.776 kb on + strand, within SMc01592at 2524.840 kb on + strandat 2524.841 kb on - strandat 2524.841 kb on - strandat 2524.929 kb on + strandat 2524.930 kb on - strandat 2524.930 kb on - strandat 2524.930 kb on - strandat 2524.930 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
2,523,421 + SMc01590 0.71 -0.2
2,523,421 + SMc01590 0.71 +0.1
2,523,421 + SMc01590 0.71 -0.2
2,523,421 + SMc01590 0.71 -0.2
2,523,421 + SMc01590 0.71 +0.1
2,523,421 + SMc01590 0.71 -0.1
2,523,421 + SMc01590 0.71 -0.2
2,523,421 + SMc01590 0.71 +0.3
2,523,421 + SMc01590 0.71 +0.2
2,523,422 - SMc01590 0.71 +0.1
2,523,422 - SMc01590 0.71 -1.2
2,523,422 - SMc01590 0.71 -0.1
2,523,422 - SMc01590 0.71 -0.2
2,523,423 + SMc01590 0.71 -0.3
2,523,423 + SMc01590 0.71 +0.3
2,523,424 - SMc01590 0.72 +0.2
2,523,424 - SMc01590 0.72 -0.1
2,523,451 + SMc01590 0.76 +0.3
2,523,451 + SMc01590 0.76 +0.3
2,523,452 - SMc01590 0.76 -0.6
2,523,456 - SMc01590 0.77 +0.3
2,523,456 - SMc01590 0.77 +0.4
2,523,456 - SMc01590 0.77 +0.2
2,523,532 + SMc01590 0.89 +0.2
2,523,533 - SMc01590 0.89 -1.3
2,523,589 + +0.1
2,523,589 + -0.3
2,523,589 + +1.2
2,523,590 - +1.8
2,523,590 - +0.8
2,523,696 + +0.3
2,523,940 - +0.1
2,523,947 - -0.3
2,523,947 - +0.2
2,523,947 - +0.6
2,523,947 - -0.6
2,523,952 + +0.3
2,524,338 + +0.1
2,524,339 - -3.8
2,524,339 - -2.8
2,524,339 - -3.5
2,524,340 + +0.4
2,524,340 + -0.1
2,524,341 - -1.0
2,524,341 - -1.5
2,524,341 - -0.9
2,524,380 - -3.4
2,524,416 + -4.8
2,524,417 - -3.0
2,524,668 - SMc01592 0.59 -3.4
2,524,669 + SMc01592 0.59 -2.0
2,524,716 - SMc01592 0.69 -4.7
2,524,716 - SMc01592 0.69 -4.0
2,524,776 + SMc01592 0.81 -3.2
2,524,840 + -3.2
2,524,841 - -3.8
2,524,841 - -2.7
2,524,929 + +1.3
2,524,930 - +1.0
2,524,930 - -0.3
2,524,930 - -0.2
2,524,930 - -0.7

Or see this region's nucleotide sequence