Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00825 and SMc00826 are separated by 137 nucleotides SMc00826 and SMc00827 are separated by 16 nucleotides
SMc00825: SMc00825 - glutamate--cysteine ligase precursor protein, at 845,337 to 846,710
SMc00825
SMc00826: SMc00826 - 16S ribosomal RNA methyltransferase RsmE, at 846,848 to 847,585
SMc00826
SMc00827: SMc00827 - transport transmembrane protein, at 847,602 to 849,146
SMc00827
Position (kb) 846
847
848 Strain fitness (log2 ratio) -1
0
1 at 847.310 kb on + strand, within SMc00826 at 847.412 kb on + strand, within SMc00826 at 847.413 kb on - strand, within SMc00826 at 847.413 kb on - strand, within SMc00826 at 847.413 kb on - strand at 847.494 kb on + strand, within SMc00826 at 847.495 kb on - strand, within SMc00826 at 847.495 kb on - strand, within SMc00826 at 847.597 kb on - strand at 847.630 kb on + strand at 847.631 kb on - strand at 847.792 kb on + strand, within SMc00827 at 847.793 kb on - strand, within SMc00827 at 848.006 kb on - strand, within SMc00827 at 848.049 kb on + strand, within SMc00827 at 848.136 kb on + strand, within SMc00827 at 848.136 kb on + strand, within SMc00827 at 848.268 kb on + strand, within SMc00827 at 848.268 kb on + strand, within SMc00827 at 848.269 kb on - strand, within SMc00827 at 848.269 kb on - strand, within SMc00827 at 848.269 kb on - strand at 848.269 kb on - strand, within SMc00827 at 848.269 kb on - strand, within SMc00827 at 848.272 kb on + strand, within SMc00827 at 848.273 kb on - strand, within SMc00827 at 848.273 kb on - strand, within SMc00827 at 848.273 kb on - strand, within SMc00827 at 848.359 kb on + strand, within SMc00827 at 848.359 kb on + strand, within SMc00827 at 848.360 kb on - strand, within SMc00827 at 848.360 kb on - strand, within SMc00827 at 848.437 kb on + strand, within SMc00827 at 848.437 kb on + strand, within SMc00827 at 848.438 kb on - strand, within SMc00827 at 848.438 kb on - strand, within SMc00827 at 848.582 kb on + strand, within SMc00827
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 847,310 + SMc00826 0.63 -0.4 847,412 + SMc00826 0.76 +0.2 847,413 - SMc00826 0.77 -0.0 847,413 - SMc00826 0.77 +0.1 847,413 - +0.3 847,494 + SMc00826 0.88 +0.3 847,495 - SMc00826 0.88 +0.0 847,495 - SMc00826 0.88 -0.1 847,597 - -0.4 847,630 + -1.3 847,631 - +0.1 847,792 + SMc00827 0.12 -0.4 847,793 - SMc00827 0.12 -0.2 848,006 - SMc00827 0.26 -0.7 848,049 + SMc00827 0.29 -1.6 848,136 + SMc00827 0.35 -1.7 848,136 + SMc00827 0.35 -1.5 848,268 + SMc00827 0.43 -0.6 848,268 + SMc00827 0.43 +0.3 848,269 - SMc00827 0.43 -0.4 848,269 - SMc00827 0.43 -0.3 848,269 - -0.1 848,269 - SMc00827 0.43 +0.3 848,269 - SMc00827 0.43 -0.6 848,272 + SMc00827 0.43 -1.0 848,273 - SMc00827 0.43 -0.3 848,273 - SMc00827 0.43 -0.2 848,273 - SMc00827 0.43 -0.7 848,359 + SMc00827 0.49 -0.8 848,359 + SMc00827 0.49 -0.7 848,360 - SMc00827 0.49 -1.0 848,360 - SMc00827 0.49 -0.4 848,437 + SMc00827 0.54 -0.5 848,437 + SMc00827 0.54 -0.7 848,438 - SMc00827 0.54 +0.1 848,438 - SMc00827 0.54 +0.2 848,582 + SMc00827 0.63 -1.1
Or see this region's nucleotide sequence