Strain Fitness in Sinorhizobium meliloti 1021 around SMc00646

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00647 and SMc00646 are separated by 197 nucleotidesSMc00646 and SMc00644 are separated by 130 nucleotides SMc00647: SMc00647 - ribosomal large subunit pseudouridine synthase, at 2,928,106 to 2,929,137 SMc00647 SMc00646: SMc00646 - RNA polymerase factor sigma-32, at 2,929,335 to 2,930,240 SMc00646 SMc00644: SMc00644 - hypothetical protein, at 2,930,371 to 2,932,632 SMc00644 Position (kb) 2929 2930 2931Strain fitness (log2 ratio) -1 0 1at 2928.877 kb on - strand, within SMc00647at 2928.938 kb on - strand, within SMc00647at 2929.162 kb on + strandat 2929.162 kb on + strandat 2929.163 kb on - strandat 2929.163 kb on - strandat 2929.164 kb on + strandat 2929.164 kb on + strandat 2929.164 kb on + strandat 2929.247 kb on + strandat 2929.247 kb on + strandat 2929.247 kb on + strandat 2929.251 kb on + strandat 2929.251 kb on + strandat 2930.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,928,877 - SMc00647 0.75 +0.1
2,928,938 - SMc00647 0.81 +0.7
2,929,162 + -0.2
2,929,162 + -0.3
2,929,163 - -0.4
2,929,163 - -0.1
2,929,164 + -0.2
2,929,164 + -0.8
2,929,164 + -0.9
2,929,247 + +0.2
2,929,247 + -0.1
2,929,247 + -0.6
2,929,251 + -0.2
2,929,251 + +0.0
2,930,373 - +0.5

Or see this region's nucleotide sequence