Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21644 and SM_b21645 are separated by 11 nucleotides SM_b21645 and SM_b21646 overlap by 4 nucleotides
SM_b21644: SM_b21644 - ABC transporter for D-Raffinose, ATPase component (from data) , at 1,672,419 to 1,674,089
_b21644
SM_b21645: SM_b21645 - ABC transporter for D-Raffinose, permease component 1 (from data) , at 1,674,101 to 1,675,228
_b21645
SM_b21646: SM_b21646 - ABC transporter for D-Raffinose, permease component 2 (from data) , at 1,675,225 to 1,676,238
_b21646
Position (kb)
1674
1675
1676 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1673.174 kb on + strand, within SM_b21644 at 1673.273 kb on + strand, within SM_b21644 at 1673.274 kb on - strand, within SM_b21644 at 1673.347 kb on + strand, within SM_b21644 at 1673.348 kb on - strand, within SM_b21644 at 1673.348 kb on - strand, within SM_b21644 at 1673.572 kb on + strand, within SM_b21644 at 1673.704 kb on + strand, within SM_b21644 at 1673.812 kb on + strand, within SM_b21644 at 1673.812 kb on + strand, within SM_b21644 at 1673.813 kb on - strand, within SM_b21644 at 1673.841 kb on - strand, within SM_b21644 at 1673.932 kb on + strand at 1673.991 kb on + strand at 1674.198 kb on + strand at 1674.199 kb on - strand at 1674.217 kb on - strand, within SM_b21645 at 1674.377 kb on + strand, within SM_b21645 at 1674.424 kb on - strand, within SM_b21645 at 1674.424 kb on - strand, within SM_b21645 at 1674.791 kb on - strand, within SM_b21645 at 1674.846 kb on + strand, within SM_b21645 at 1674.847 kb on - strand, within SM_b21645 at 1674.891 kb on + strand, within SM_b21645 at 1674.954 kb on + strand, within SM_b21645 at 1674.955 kb on - strand, within SM_b21645 at 1675.158 kb on + strand at 1675.159 kb on - strand at 1675.232 kb on + strand at 1675.232 kb on + strand at 1675.232 kb on + strand at 1675.233 kb on - strand at 1675.234 kb on + strand at 1675.235 kb on - strand at 1675.346 kb on + strand, within SM_b21646 at 1675.346 kb on + strand, within SM_b21646 at 1675.346 kb on + strand, within SM_b21646 at 1675.346 kb on + strand, within SM_b21646 at 1675.439 kb on + strand, within SM_b21646 at 1675.440 kb on - strand, within SM_b21646 at 1675.460 kb on + strand, within SM_b21646 at 1675.460 kb on + strand, within SM_b21646 at 1675.460 kb on + strand, within SM_b21646 at 1675.461 kb on - strand, within SM_b21646 at 1675.461 kb on - strand, within SM_b21646 at 1675.461 kb on - strand, within SM_b21646 at 1675.461 kb on - strand, within SM_b21646 at 1675.550 kb on + strand, within SM_b21646 at 1675.596 kb on + strand, within SM_b21646 at 1675.597 kb on - strand, within SM_b21646 at 1675.597 kb on - strand, within SM_b21646 at 1675.597 kb on - strand, within SM_b21646 at 1675.601 kb on + strand, within SM_b21646 at 1675.750 kb on - strand, within SM_b21646 at 1675.750 kb on - strand, within SM_b21646 at 1675.752 kb on - strand, within SM_b21646 at 1675.752 kb on - strand, within SM_b21646 at 1675.752 kb on - strand, within SM_b21646 at 1675.752 kb on - strand, within SM_b21646 at 1675.804 kb on + strand, within SM_b21646 at 1675.835 kb on + strand, within SM_b21646 at 1675.897 kb on + strand, within SM_b21646 at 1675.898 kb on - strand, within SM_b21646 at 1675.962 kb on - strand, within SM_b21646 at 1675.964 kb on + strand, within SM_b21646 at 1676.037 kb on + strand, within SM_b21646 at 1676.060 kb on + strand, within SM_b21646 at 1676.061 kb on - strand, within SM_b21646 at 1676.138 kb on + strand at 1676.138 kb on + strand at 1676.139 kb on - strand at 1676.213 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,673,174 + SM_b21644 0.45 +0.2 1,673,273 + SM_b21644 0.51 -0.1 1,673,274 - SM_b21644 0.51 -0.6 1,673,347 + SM_b21644 0.56 +0.1 1,673,348 - SM_b21644 0.56 -0.3 1,673,348 - SM_b21644 0.56 +0.5 1,673,572 + SM_b21644 0.69 -0.2 1,673,704 + SM_b21644 0.77 -0.4 1,673,812 + SM_b21644 0.83 -0.2 1,673,812 + SM_b21644 0.83 -0.2 1,673,813 - SM_b21644 0.83 +0.6 1,673,841 - SM_b21644 0.85 -0.2 1,673,932 + +0.8 1,673,991 + +0.2 1,674,198 + +1.9 1,674,199 - -0.1 1,674,217 - SM_b21645 0.10 +0.2 1,674,377 + SM_b21645 0.24 -0.4 1,674,424 - SM_b21645 0.29 -0.0 1,674,424 - SM_b21645 0.29 +0.5 1,674,791 - SM_b21645 0.61 +0.0 1,674,846 + SM_b21645 0.66 -0.6 1,674,847 - SM_b21645 0.66 -0.3 1,674,891 + SM_b21645 0.70 -1.4 1,674,954 + SM_b21645 0.76 +0.6 1,674,955 - SM_b21645 0.76 -0.4 1,675,158 + -0.4 1,675,159 - -0.2 1,675,232 + -1.5 1,675,232 + +0.3 1,675,232 + +0.9 1,675,233 - -0.4 1,675,234 + -0.6 1,675,235 - -0.3 1,675,346 + SM_b21646 0.12 -0.0 1,675,346 + SM_b21646 0.12 +1.2 1,675,346 + SM_b21646 0.12 -0.5 1,675,346 + SM_b21646 0.12 +0.2 1,675,439 + SM_b21646 0.21 -0.2 1,675,440 - SM_b21646 0.21 +0.7 1,675,460 + SM_b21646 0.23 -0.1 1,675,460 + SM_b21646 0.23 +0.1 1,675,460 + SM_b21646 0.23 +0.4 1,675,461 - SM_b21646 0.23 -0.4 1,675,461 - SM_b21646 0.23 +0.1 1,675,461 - SM_b21646 0.23 -0.1 1,675,461 - SM_b21646 0.23 -0.0 1,675,550 + SM_b21646 0.32 +0.3 1,675,596 + SM_b21646 0.37 -1.7 1,675,597 - SM_b21646 0.37 +0.2 1,675,597 - SM_b21646 0.37 -0.2 1,675,597 - SM_b21646 0.37 +0.3 1,675,601 + SM_b21646 0.37 +0.6 1,675,750 - SM_b21646 0.52 +0.1 1,675,750 - SM_b21646 0.52 -0.1 1,675,752 - SM_b21646 0.52 +0.4 1,675,752 - SM_b21646 0.52 -0.4 1,675,752 - SM_b21646 0.52 +1.9 1,675,752 - SM_b21646 0.52 +0.1 1,675,804 + SM_b21646 0.57 -0.0 1,675,835 + SM_b21646 0.60 +0.9 1,675,897 + SM_b21646 0.66 -0.2 1,675,898 - SM_b21646 0.66 -0.0 1,675,962 - SM_b21646 0.73 +0.6 1,675,964 + SM_b21646 0.73 -0.4 1,676,037 + SM_b21646 0.80 -0.1 1,676,060 + SM_b21646 0.82 -3.2 1,676,061 - SM_b21646 0.82 -0.0 1,676,138 + +0.3 1,676,138 + +0.1 1,676,139 - +0.0 1,676,213 - +0.1
Or see this region's nucleotide sequence