Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20203

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20202 and SM_b20203 are separated by 101 nucleotidesSM_b20203 and SM_b20204 are separated by 282 nucleotidesSM_b20204 and SM_b20205 are separated by 41 nucleotides SM_b20202: SM_b20202 - fructose-1,6-bisphosphatase, at 211,317 to 212,366 _b20202 SM_b20203: SM_b20203 - transcriptional regulator, at 212,468 to 213,409 _b20203 SM_b20204: SM_b20204 - coenzyme PQQ synthesis protein PqqA, at 213,692 to 213,787 _b20204 SM_b20205: SM_b20205 - pyrroloquinoline quinone biosynthesis protein PqqB, at 213,829 to 214,740 _b20205 Position (kb) 212 213 214Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 211.565 kb on + strand, within SM_b20202at 211.566 kb on - strand, within SM_b20202at 211.566 kb on - strand, within SM_b20202at 211.566 kb on - strand, within SM_b20202at 211.568 kb on - strand, within SM_b20202at 211.711 kb on + strand, within SM_b20202at 211.711 kb on + strand, within SM_b20202at 211.742 kb on - strand, within SM_b20202at 211.799 kb on - strand, within SM_b20202at 211.799 kb on - strand, within SM_b20202at 211.888 kb on + strand, within SM_b20202at 211.888 kb on + strand, within SM_b20202at 211.889 kb on - strand, within SM_b20202at 212.010 kb on - strand, within SM_b20202at 212.104 kb on + strand, within SM_b20202at 212.104 kb on + strand, within SM_b20202at 212.146 kb on - strand, within SM_b20202at 212.342 kb on - strandat 213.205 kb on + strand, within SM_b20203at 213.452 kb on + strandat 213.452 kb on + strandat 213.453 kb on - strandat 213.453 kb on - strandat 213.485 kb on + strandat 213.486 kb on - strandat 213.519 kb on - strandat 213.598 kb on - strandat 213.692 kb on - strandat 213.692 kb on - strandat 213.692 kb on - strandat 213.692 kb on - strandat 214.361 kb on + strand, within SM_b20205at 214.361 kb on + strand, within SM_b20205at 214.362 kb on - strand, within SM_b20205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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211,565 + SM_b20202 0.24 +1.0
211,566 - SM_b20202 0.24 +0.5
211,566 - SM_b20202 0.24 +0.6
211,566 - SM_b20202 0.24 +0.2
211,568 - SM_b20202 0.24 +0.3
211,711 + SM_b20202 0.38 +0.6
211,711 + SM_b20202 0.38 -0.1
211,742 - SM_b20202 0.40 +0.2
211,799 - SM_b20202 0.46 +0.2
211,799 - SM_b20202 0.46 +0.9
211,888 + SM_b20202 0.54 +0.9
211,888 + SM_b20202 0.54 +0.4
211,889 - SM_b20202 0.54 -4.3
212,010 - SM_b20202 0.66 +0.8
212,104 + SM_b20202 0.75 +0.5
212,104 + SM_b20202 0.75 +1.1
212,146 - SM_b20202 0.79 +1.4
212,342 - +0.4
213,205 + SM_b20203 0.78 +1.0
213,452 + -0.2
213,452 + +0.5
213,453 - -0.0
213,453 - +0.0
213,485 + +0.1
213,486 - -0.2
213,519 - -0.2
213,598 - +0.7
213,692 - -0.2
213,692 - +0.9
213,692 - -0.4
213,692 - -0.3
214,361 + SM_b20205 0.58 -0.0
214,361 + SM_b20205 0.58 +0.5
214,362 - SM_b20205 0.58 -2.2

Or see this region's nucleotide sequence