Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37510

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS37500 and RR42_RS37505 are separated by 80 nucleotidesRR42_RS37505 and RR42_RS37510 are separated by 37 nucleotidesRR42_RS37510 and RR42_RS37515 are separated by 81 nucleotides RR42_RS37500: RR42_RS37500 - hypothetical protein, at 3,891,310 to 3,892,116 _RS37500 RR42_RS37505: RR42_RS37505 - peptidase C39, at 3,892,197 to 3,892,889 _RS37505 RR42_RS37510: RR42_RS37510 - hypothetical protein, at 3,892,927 to 3,893,682 _RS37510 RR42_RS37515: RR42_RS37515 - hypothetical protein, at 3,893,764 to 3,895,077 _RS37515 Position (kb) 3892 3893 3894Strain fitness (log2 ratio) -3 -2 -1 0 1at 3891.955 kb on + strand, within RR42_RS37500at 3892.207 kb on + strandat 3892.419 kb on + strand, within RR42_RS37505at 3892.518 kb on + strand, within RR42_RS37505at 3892.518 kb on + strand, within RR42_RS37505at 3892.519 kb on - strand, within RR42_RS37505at 3892.519 kb on - strand, within RR42_RS37505at 3892.563 kb on + strand, within RR42_RS37505at 3892.564 kb on - strand, within RR42_RS37505at 3892.564 kb on - strand, within RR42_RS37505at 3892.604 kb on - strand, within RR42_RS37505at 3892.620 kb on + strand, within RR42_RS37505at 3892.670 kb on - strand, within RR42_RS37505at 3892.882 kb on - strandat 3892.882 kb on - strandat 3893.062 kb on + strand, within RR42_RS37510at 3893.124 kb on + strand, within RR42_RS37510at 3893.125 kb on - strand, within RR42_RS37510at 3893.452 kb on - strand, within RR42_RS37510at 3893.457 kb on - strand, within RR42_RS37510at 3893.592 kb on + strand, within RR42_RS37510at 3893.592 kb on + strand, within RR42_RS37510at 3893.593 kb on - strand, within RR42_RS37510at 3893.654 kb on + strandat 3893.680 kb on + strandat 3893.681 kb on - strandat 3893.945 kb on + strand, within RR42_RS37515at 3893.946 kb on - strand, within RR42_RS37515at 3893.946 kb on - strand, within RR42_RS37515at 3893.946 kb on - strand, within RR42_RS37515at 3893.949 kb on - strand, within RR42_RS37515at 3894.206 kb on - strand, within RR42_RS37515at 3894.206 kb on - strand, within RR42_RS37515at 3894.212 kb on - strand, within RR42_RS37515at 3894.214 kb on + strand, within RR42_RS37515at 3894.215 kb on - strand, within RR42_RS37515at 3894.215 kb on - strand, within RR42_RS37515at 3894.313 kb on + strand, within RR42_RS37515at 3894.314 kb on - strand, within RR42_RS37515at 3894.314 kb on - strand, within RR42_RS37515at 3894.332 kb on - strand, within RR42_RS37515at 3894.487 kb on + strand, within RR42_RS37515at 3894.487 kb on + strand, within RR42_RS37515at 3894.487 kb on + strand, within RR42_RS37515at 3894.487 kb on + strand, within RR42_RS37515at 3894.488 kb on - strand, within RR42_RS37515at 3894.488 kb on - strand, within RR42_RS37515at 3894.651 kb on - strand, within RR42_RS37515

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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3,891,955 + RR42_RS37500 0.80 -1.0
3,892,207 + +0.5
3,892,419 + RR42_RS37505 0.32 -0.6
3,892,518 + RR42_RS37505 0.46 -0.1
3,892,518 + RR42_RS37505 0.46 +0.1
3,892,519 - RR42_RS37505 0.46 -1.6
3,892,519 - RR42_RS37505 0.46 +0.2
3,892,563 + RR42_RS37505 0.53 -2.4
3,892,564 - RR42_RS37505 0.53 +0.2
3,892,564 - RR42_RS37505 0.53 -1.0
3,892,604 - RR42_RS37505 0.59 -0.0
3,892,620 + RR42_RS37505 0.61 +0.3
3,892,670 - RR42_RS37505 0.68 +0.9
3,892,882 - +0.3
3,892,882 - +0.4
3,893,062 + RR42_RS37510 0.18 -1.6
3,893,124 + RR42_RS37510 0.26 -1.6
3,893,125 - RR42_RS37510 0.26 +0.8
3,893,452 - RR42_RS37510 0.69 +1.1
3,893,457 - RR42_RS37510 0.70 -0.2
3,893,592 + RR42_RS37510 0.88 -0.9
3,893,592 + RR42_RS37510 0.88 -0.8
3,893,593 - RR42_RS37510 0.88 -0.1
3,893,654 + -0.3
3,893,680 + +0.4
3,893,681 - -1.3
3,893,945 + RR42_RS37515 0.14 -1.2
3,893,946 - RR42_RS37515 0.14 +0.1
3,893,946 - RR42_RS37515 0.14 +0.4
3,893,946 - RR42_RS37515 0.14 +0.3
3,893,949 - RR42_RS37515 0.14 +1.5
3,894,206 - RR42_RS37515 0.34 -0.1
3,894,206 - RR42_RS37515 0.34 -0.7
3,894,212 - RR42_RS37515 0.34 -0.8
3,894,214 + RR42_RS37515 0.34 +0.2
3,894,215 - RR42_RS37515 0.34 -1.3
3,894,215 - RR42_RS37515 0.34 -0.1
3,894,313 + RR42_RS37515 0.42 -1.1
3,894,314 - RR42_RS37515 0.42 +0.6
3,894,314 - RR42_RS37515 0.42 +0.2
3,894,332 - RR42_RS37515 0.43 -2.0
3,894,487 + RR42_RS37515 0.55 -0.5
3,894,487 + RR42_RS37515 0.55 +0.6
3,894,487 + RR42_RS37515 0.55 -2.8
3,894,487 + RR42_RS37515 0.55 -0.3
3,894,488 - RR42_RS37515 0.55 -0.2
3,894,488 - RR42_RS37515 0.55 -1.5
3,894,651 - RR42_RS37515 0.68 -0.3

Or see this region's nucleotide sequence