Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37475

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,885,413	+				-1.0
3,885,414	-				+1.1
3,885,414	-				+0.4
3,885,439	+				-2.1
3,885,439	+				-1.6
3,885,439	+				+0.4
3,885,439	+				+0.4
3,885,517	+				-0.4
3,885,550	+		RR42_RS37470	0.11	-0.2
3,885,551	-		RR42_RS37470	0.11	-0.7
3,885,551	-		RR42_RS37470	0.11	+0.2
3,885,611	-		RR42_RS37470	0.18	-0.0
3,885,641	+		RR42_RS37470	0.22	-0.2
3,885,813	-		RR42_RS37470	0.45	+0.4
3,885,813	-		RR42_RS37470	0.45	-0.2
3,885,944	-		RR42_RS37470	0.62	+0.1
3,885,944	-		RR42_RS37470	0.62	-0.6
3,885,944	-		RR42_RS37470	0.62	+0.3
3,885,952	+		RR42_RS37470	0.63	+0.8
3,885,952	+		RR42_RS37470	0.63	-0.3
3,885,952	+		RR42_RS37470	0.63	-0.1
3,885,952	+		RR42_RS37470	0.63	+0.4
3,885,952	+		RR42_RS37470	0.63	-0.4
3,885,953	-		RR42_RS37470	0.63	+0.7
3,885,953	-		RR42_RS37470	0.63	+0.3
3,886,017	+		RR42_RS37470	0.71	-0.5
3,886,037	+		RR42_RS37470	0.74	+0.3
3,886,037	+		RR42_RS37470	0.74	-0.4
3,886,038	-		RR42_RS37470	0.74	+1.5
3,886,038	-		RR42_RS37470	0.74	-0.9
3,886,038	-		RR42_RS37470	0.74	-0.3
3,886,038	-		RR42_RS37470	0.74	+0.6
3,886,038	-		RR42_RS37470	0.74	-1.2
3,886,057	+		RR42_RS37470	0.76	+0.4
3,886,058	-		RR42_RS37470	0.76	-0.6
3,886,219	+				-0.3
3,886,219	+				-1.3
3,886,219	+				+0.4
3,886,220	-				-0.4
3,886,238	-				+0.9
3,886,238	-				+1.2
3,886,379	+				-0.8
3,886,379	+				+1.9
3,886,379	+				+0.7
3,886,408	+				+1.7
3,886,409	-				+0.2
3,886,409	-				-1.1
3,886,514	+		RR42_RS37475	0.14	+0.9
3,886,514	+		RR42_RS37475	0.14	+0.9
3,886,514	+		RR42_RS37475	0.14	+0.5
3,886,515	-		RR42_RS37475	0.14	-1.7
3,886,573	+		RR42_RS37475	0.18	-0.8
3,886,806	-		RR42_RS37475	0.33	+1.7
3,886,822	-		RR42_RS37475	0.34	+1.4
3,886,855	-		RR42_RS37475	0.36	+2.2
3,887,120	+		RR42_RS37475	0.52	+0.2
3,887,121	-		RR42_RS37475	0.53	+0.9
3,887,327	+		RR42_RS37475	0.66	-1.9
3,887,327	+		RR42_RS37475	0.66	+0.6
3,887,327	+		RR42_RS37475	0.66	+0.5
3,887,327	+		RR42_RS37475	0.66	+0.4
3,887,328	-		RR42_RS37475	0.66	+0.9
3,887,454	+		RR42_RS37475	0.74	-0.6
3,887,454	+		RR42_RS37475	0.74	+0.3
3,887,455	-		RR42_RS37475	0.74	+1.1
3,887,576	+		RR42_RS37475	0.81	+0.7
3,887,576	+		RR42_RS37475	0.81	+0.6
3,887,576	+		RR42_RS37475	0.81	-0.5
3,887,576	+		RR42_RS37475	0.81	+0.1
3,887,577	-		RR42_RS37475	0.81	+0.4
3,887,577	-		RR42_RS37475	0.81	+1.4
3,887,577	-		RR42_RS37475	0.81	+0.7
3,887,800	-				+1.1
3,887,855	-				+0.6
3,888,086	+				-0.6
3,888,195	+		RR42_RS37480	0.20	-2.0
3,888,195	+		RR42_RS37480	0.20	-0.6
3,888,196	-		RR42_RS37480	0.20	-0.7
3,888,206	+		RR42_RS37480	0.21	-0.4
3,888,813	+		RR42_RS37480	0.84	-0.8
3,888,813	+		RR42_RS37480	0.84	-0.4
3,888,814	-		RR42_RS37480	0.84	-0.0
3,888,814	-		RR42_RS37480	0.84	+0.5
3,888,814	-		RR42_RS37480	0.84	-1.1
3,888,815	+		RR42_RS37480	0.84	-0.6
3,888,815	+		RR42_RS37480	0.84	-1.1
3,888,815	+		RR42_RS37480	0.84	-0.2
3,888,815	+		RR42_RS37480	0.84	-0.6
3,888,815	+		RR42_RS37480	0.84	-2.8
3,888,815	+		RR42_RS37480	0.84	-0.1
3,888,815	+		RR42_RS37480	0.84	-0.1
3,888,815	+		RR42_RS37480	0.84	+0.9
3,888,816	-		RR42_RS37480	0.84	+0.0
3,888,816	-		RR42_RS37480	0.84	-1.3
3,888,816	-		RR42_RS37480	0.84	+0.6
3,888,816	-		RR42_RS37480	0.84	+2.2
3,888,816	-		RR42_RS37480	0.84	+0.6
3,888,816	-		RR42_RS37480	0.84	-0.3
3,888,816	-		RR42_RS37480	0.84	-0.9
3,888,816	-		RR42_RS37480	0.84	+0.4
3,888,816	-		RR42_RS37480	0.84	+1.6