Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36665

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,680,719	+				-0.6
3,680,749	+		RR42_RS36660	0.12	-0.5
3,680,749	+		RR42_RS36660	0.12	-0.8
3,681,001	+		RR42_RS36660	0.44	-0.4
3,681,323	+		RR42_RS36660	0.87	-1.0
3,681,355	+				-1.3
3,681,355	+				+0.9
3,681,355	+				-0.3
3,681,355	+				-1.2
3,681,356	-				-0.8
3,681,476	+				-0.9
3,681,497	+				-0.7
3,681,497	+				-0.1
3,681,497	+				-2.3
3,681,497	+				+0.6
3,681,497	+				-0.4
3,681,498	-				+0.3
3,681,498	-				+0.2
3,681,501	+				-0.9
3,681,501	+				-1.0
3,681,501	+				+0.3
3,681,501	+				-1.7
3,681,501	+				-1.8
3,681,501	+				-0.8
3,681,502	-				+0.2
3,681,502	-				-0.7
3,681,502	-				+0.3
3,681,502	-				-1.0
3,681,502	-				-1.2
3,681,502	-				+1.2
3,681,502	-				-0.8
3,681,523	+				-0.1
3,681,567	-				-1.5
3,681,567	-				+0.0
3,681,774	+		RR42_RS36665	0.13	-3.6
3,681,774	+		RR42_RS36665	0.13	-2.5
3,681,914	-		RR42_RS36665	0.28	-0.8
3,682,159	+		RR42_RS36665	0.54	-4.1
3,682,159	+		RR42_RS36665	0.54	-1.0
3,682,160	-		RR42_RS36665	0.54	-3.4
3,682,160	-		RR42_RS36665	0.54	-1.5
3,682,262	+		RR42_RS36665	0.65	-2.7
3,682,262	+		RR42_RS36665	0.65	-2.8
3,682,262	+		RR42_RS36665	0.65	-3.8
3,682,263	-		RR42_RS36665	0.65	-4.1
3,682,263	-		RR42_RS36665	0.65	-0.7
3,682,306	+		RR42_RS36665	0.70	-2.2
3,682,306	+		RR42_RS36665	0.70	-2.5
3,682,306	+		RR42_RS36665	0.70	-3.4
3,682,306	+		RR42_RS36665	0.70	-2.2
3,682,307	-		RR42_RS36665	0.70	-3.2
3,682,354	+		RR42_RS36665	0.75	-2.4
3,682,355	-		RR42_RS36665	0.75	-3.9
3,682,370	+		RR42_RS36665	0.76	-1.5
3,682,370	+		RR42_RS36665	0.76	-0.8
3,682,371	-		RR42_RS36665	0.76	-4.0
3,682,371	-		RR42_RS36665	0.76	-4.2
3,682,598	+				-3.3
3,682,598	+				+0.2
3,682,612	+				-3.9
3,682,807	+				-1.5
3,682,807	+				-0.3
3,682,888	+				-2.5
3,682,889	-				-0.8
3,682,889	-				+1.9
3,682,905	+				-2.5
3,682,906	-				-0.2
3,682,906	-				+0.4
3,682,906	-				+1.4
3,682,908	+				-2.8
3,682,908	+				-3.4
3,682,908	+				-3.5
3,682,909	-				+2.5
3,682,909	-				+1.4
3,682,909	-				+0.7
3,682,909	-				+0.4
3,682,909	-				+1.6
3,682,909	-				+1.6
3,682,924	+				-3.1
3,682,924	+				+0.3
3,682,984	+				-2.9
3,682,985	-				+1.7
3,682,985	-				+1.2
3,682,985	-				-1.1
3,682,985	-				+1.0
3,682,985	-				+2.1
3,683,139	+				-1.4
3,683,139	+				+0.4
3,683,140	-				+1.7
3,683,206	-				+0.7
3,683,206	-				+0.7
3,683,230	-				+1.0
3,683,230	-				+0.7