Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36480

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,638,584	+		RR42_RS36475	0.43	-0.0
3,638,584	+		RR42_RS36475	0.43	+0.4
3,638,585	-		RR42_RS36475	0.43	+0.6
3,638,585	-		RR42_RS36475	0.43	+0.0
3,638,587	-		RR42_RS36475	0.43	-1.3
3,638,587	-		RR42_RS36475	0.43	+0.3
3,638,606	-		RR42_RS36475	0.44	+0.4
3,638,606	-		RR42_RS36475	0.44	-0.1
3,638,665	+		RR42_RS36475	0.48	-0.9
3,638,744	-		RR42_RS36475	0.53	+0.4
3,639,022	-		RR42_RS36475	0.71	+0.4
3,639,025	+		RR42_RS36475	0.71	+0.2
3,639,026	-		RR42_RS36475	0.71	-0.8
3,639,026	-		RR42_RS36475	0.71	-0.4
3,639,088	+		RR42_RS36475	0.76	-0.2
3,639,088	+		RR42_RS36475	0.76	-0.0
3,639,175	+		RR42_RS36475	0.81	+0.2
3,639,176	-		RR42_RS36475	0.81	+0.6
3,639,239	-		RR42_RS36475	0.85	+0.6
3,639,313	+				-1.2
3,639,314	-				-0.8
3,639,321	+				+1.0
3,639,321	+				+1.6
3,639,321	+				+1.3
3,639,322	-				+0.2
3,639,322	-				-1.7
3,639,322	-				-0.7
3,639,338	+				+1.4
3,639,454	+				+0.3
3,639,454	+				+1.2
3,639,454	+				+0.5
3,639,454	+				+0.6
3,639,455	-				-0.3
3,639,455	-				+0.8
3,639,455	-				+1.8
3,639,455	-				-0.2
3,639,463	+				+0.7
3,639,463	+				+2.2
3,639,487	+				+0.6
3,639,608	+				+1.2
3,639,608	+				-0.4
3,639,608	+				+2.0
3,639,674	+				-1.2
3,639,674	+				-0.1
3,639,674	+				-2.2
3,639,674	+				+1.2
3,639,720	-		RR42_RS36480	0.13	+1.2
3,639,725	+		RR42_RS36480	0.13	+0.1
3,639,725	+		RR42_RS36480	0.13	+1.0
3,639,726	-		RR42_RS36480	0.14	+0.4
3,639,726	-		RR42_RS36480	0.14	-2.2
3,639,726	-		RR42_RS36480	0.14	+0.8
3,639,821	+		RR42_RS36480	0.21	+0.1
3,639,821	+		RR42_RS36480	0.21	+0.2
3,639,822	-		RR42_RS36480	0.21	+0.2
3,639,822	-		RR42_RS36480	0.21	+0.7
3,639,826	-		RR42_RS36480	0.21	-0.2
3,639,826	-		RR42_RS36480	0.21	-0.3
3,639,826	-		RR42_RS36480	0.21	-0.8
3,639,889	+		RR42_RS36480	0.26	-1.3
3,639,897	+		RR42_RS36480	0.27	+0.1
3,639,990	-		RR42_RS36480	0.34	-1.0
3,639,990	-		RR42_RS36480	0.34	+0.6
3,640,226	+		RR42_RS36480	0.53	-0.1
3,640,256	+		RR42_RS36480	0.55	-1.1
3,640,257	-		RR42_RS36480	0.55	-0.8
3,640,742	-				+1.3
3,640,742	-				+1.7
3,640,830	+				+0.8
3,640,847	-				-1.7
3,640,847	-				-0.8
3,640,869	+				+0.7
3,640,884	-				-0.0
3,640,893	+				-1.5
3,640,930	-				+0.2
3,641,074	-		RR42_RS36485	0.11	-1.0
3,641,074	-		RR42_RS36485	0.11	+0.5
3,641,287	-		RR42_RS36485	0.22	-0.7
3,641,310	+		RR42_RS36485	0.23	+0.2
3,641,319	+		RR42_RS36485	0.23	-0.9
3,641,319	+		RR42_RS36485	0.23	+0.1
3,641,382	+		RR42_RS36485	0.27	+0.7
3,641,383	-		RR42_RS36485	0.27	-0.1
3,641,383	-		RR42_RS36485	0.27	-1.0
3,641,394	+		RR42_RS36485	0.27	+0.8
3,641,394	+		RR42_RS36485	0.27	+0.2
3,641,395	-		RR42_RS36485	0.27	+0.2
3,641,395	-		RR42_RS36485	0.27	-0.0
3,641,395	-		RR42_RS36485	0.27	-1.3
3,641,460	+		RR42_RS36485	0.31	+0.4
3,641,460	+		RR42_RS36485	0.31	+0.4
3,641,461	-		RR42_RS36485	0.31	+0.6
3,641,461	-		RR42_RS36485	0.31	+0.6
3,641,461	-		RR42_RS36485	0.31	+0.4
3,641,461	-		RR42_RS36485	0.31	+1.6
3,641,487	-		RR42_RS36485	0.32	+0.7
3,641,487	-		RR42_RS36485	0.32	+0.5
3,641,495	-		RR42_RS36485	0.33	-0.3
3,641,586	+		RR42_RS36485	0.37	+0.5
3,641,595	+		RR42_RS36485	0.38	-0.6
3,641,640	+		RR42_RS36485	0.40	-1.2
3,641,641	-		RR42_RS36485	0.40	-0.2
3,641,778	+		RR42_RS36485	0.47	-0.2
3,641,779	-		RR42_RS36485	0.47	+0.8
3,641,779	-		RR42_RS36485	0.47	+0.4
3,641,811	+		RR42_RS36485	0.49	-1.2
3,641,812	-		RR42_RS36485	0.49	+0.3
3,641,829	+		RR42_RS36485	0.50	-0.6
3,641,830	-		RR42_RS36485	0.50	+0.5