Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36375

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,611,267	-		RR42_RS36370	0.37	+0.7
3,611,342	-		RR42_RS36370	0.45	-0.4
3,611,342	-		RR42_RS36370	0.45	-0.4
3,611,443	-		RR42_RS36370	0.56	+0.9
3,612,047	+				-2.3
3,612,047	+				+0.9
3,612,403	+		RR42_RS36375	0.28	-0.4
3,612,404	-		RR42_RS36375	0.28	-1.4
3,612,404	-		RR42_RS36375	0.28	+1.6
3,612,406	+		RR42_RS36375	0.29	+2.1
3,612,406	+		RR42_RS36375	0.29	-0.0
3,612,406	+		RR42_RS36375	0.29	+2.7
3,612,449	+		RR42_RS36375	0.31	-0.9
3,612,592	+		RR42_RS36375	0.40	+0.5
3,612,593	-		RR42_RS36375	0.40	+0.3
3,612,697	+		RR42_RS36375	0.47	+0.6
3,612,698	-		RR42_RS36375	0.47	+0.8
3,612,698	-		RR42_RS36375	0.47	-0.2
3,612,879	+		RR42_RS36375	0.59	+0.1
3,612,879	+		RR42_RS36375	0.59	-0.3
3,612,880	-		RR42_RS36375	0.59	+0.2
3,612,883	+		RR42_RS36375	0.59	+0.5
3,612,883	+		RR42_RS36375	0.59	-0.3
3,612,883	+		RR42_RS36375	0.59	-1.9
3,612,884	-		RR42_RS36375	0.59	+0.8
3,612,884	-		RR42_RS36375	0.59	-0.9
3,612,884	-		RR42_RS36375	0.59	+1.1
3,612,910	+		RR42_RS36375	0.61	+0.4
3,612,911	-		RR42_RS36375	0.61	+0.1
3,613,357	+		RR42_RS36375	0.89	+0.0
3,613,357	+		RR42_RS36375	0.89	+0.1
3,613,357	+		RR42_RS36375	0.89	+0.5
3,613,381	+				-0.1
3,613,382	-				-1.2
3,613,462	+				+0.9
3,613,463	-				-0.6
3,613,487	+				+0.1
3,613,528	+				+0.4
3,613,528	+				+0.8
3,613,529	-				+0.6
3,613,731	-				+0.2
3,613,933	+				+0.6
3,613,933	+				-0.1
3,613,933	+				+1.0
3,614,505	-		RR42_RS36380	0.31	-0.8