Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36315

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,599,518	+		RR42_RS36310	0.25	-0.5
3,599,518	+		RR42_RS36310	0.25	+0.2
3,599,519	-		RR42_RS36310	0.25	+1.3
3,599,519	-		RR42_RS36310	0.25	+0.5
3,599,596	+		RR42_RS36310	0.33	+0.9
3,599,597	-		RR42_RS36310	0.33	+2.3
3,599,719	+		RR42_RS36310	0.45	+2.6
3,599,720	-		RR42_RS36310	0.45	+1.5
3,599,794	+		RR42_RS36310	0.53	+1.1
3,599,795	-		RR42_RS36310	0.53	+0.8
3,599,810	-		RR42_RS36310	0.54	+0.2
3,599,858	+		RR42_RS36310	0.59	-0.0
3,599,858	+		RR42_RS36310	0.59	+0.7
3,599,859	-		RR42_RS36310	0.59	+0.4
3,600,028	+		RR42_RS36310	0.76	+0.1
3,600,029	-		RR42_RS36310	0.76	-1.4
3,600,029	-		RR42_RS36310	0.76	+0.1
3,600,029	-		RR42_RS36310	0.76	+1.1
3,600,211	+				+0.1
3,600,212	-				+0.4
3,600,262	+				+1.8
3,600,263	-				+0.9
3,600,273	+				+0.0
3,600,285	-				-1.4
3,600,361	+				+0.2
3,600,388	+				-0.0
3,600,534	+				+2.1
3,600,535	-				-1.7
3,600,535	-				-0.4
3,600,735	+		RR42_RS36315	0.37	+0.5
3,600,736	-		RR42_RS36315	0.37	-1.8
3,600,814	-		RR42_RS36315	0.49	+0.6
3,600,993	-		RR42_RS36315	0.75	-0.6
3,601,073	+		RR42_RS36315	0.86	-1.0
3,601,110	-				+0.5
3,601,110	-				+0.8
3,601,154	+				-0.1
3,601,154	+				+0.7
3,601,154	+				+0.8
3,601,245	+				-0.6
3,601,246	-				-2.4
3,601,246	-				+0.0
3,601,246	-				+1.1
3,601,270	-				+0.2
3,601,599	+		RR42_RS36320	0.29	+0.5
3,601,599	+		RR42_RS36320	0.29	-0.3
3,601,599	+		RR42_RS36320	0.29	+0.5
3,601,599	+		RR42_RS36320	0.29	-0.5
3,601,599	+		RR42_RS36320	0.29	+0.5
3,601,599	+		RR42_RS36320	0.29	-0.2
3,601,600	-		RR42_RS36320	0.30	+0.4
3,601,600	-		RR42_RS36320	0.30	+1.1
3,601,600	-		RR42_RS36320	0.30	-0.1
3,601,788	+		RR42_RS36320	0.45	+0.0
3,601,789	-		RR42_RS36320	0.46	-1.0