Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36270

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,586,615	+		RR42_RS36265	0.19	-2.3
3,586,615	+		RR42_RS36265	0.19	-0.2
3,586,616	-		RR42_RS36265	0.19	-3.6
3,586,616	-		RR42_RS36265	0.19	-2.6
3,586,616	-		RR42_RS36265	0.19	-1.7
3,586,712	+		RR42_RS36265	0.27	-2.7
3,586,712	+		RR42_RS36265	0.27	-3.4
3,586,763	+		RR42_RS36265	0.31	-3.2
3,587,075	+		RR42_RS36265	0.57	-3.8
3,587,075	+		RR42_RS36265	0.57	-4.1
3,587,076	-		RR42_RS36265	0.57	-3.8
3,587,076	-		RR42_RS36265	0.57	-3.1
3,587,076	-		RR42_RS36265	0.57	-1.4
3,587,076	-		RR42_RS36265	0.57	-2.2
3,587,181	+		RR42_RS36265	0.65	+0.8
3,587,228	+		RR42_RS36265	0.69	+0.7
3,587,228	+		RR42_RS36265	0.69	+0.9
3,587,228	+		RR42_RS36265	0.69	+0.5
3,587,330	+		RR42_RS36265	0.77	-3.6
3,587,330	+		RR42_RS36265	0.77	-2.4
3,587,330	+		RR42_RS36265	0.77	-2.0
3,587,633	+				+0.1
3,587,676	-				-3.3
3,587,694	+				-2.6
3,587,843	+		RR42_RS36270	0.10	-5.2
3,587,843	+		RR42_RS36270	0.10	-3.7
3,587,867	+		RR42_RS36270	0.11	-4.8
3,587,867	+		RR42_RS36270	0.11	-4.3
3,587,867	+		RR42_RS36270	0.11	-2.5
3,587,868	-		RR42_RS36270	0.11	-3.5
3,587,868	-		RR42_RS36270	0.11	-0.9
3,587,868	-		RR42_RS36270	0.11	-3.1
3,587,894	+		RR42_RS36270	0.12	-0.5
3,587,926	-		RR42_RS36270	0.14	-2.0
3,587,926	-		RR42_RS36270	0.14	-3.4
3,587,973	-		RR42_RS36270	0.16	-1.4
3,588,018	-		RR42_RS36270	0.18	-3.3
3,588,104	+		RR42_RS36270	0.21	-3.4
3,588,105	-		RR42_RS36270	0.21	-1.4
3,588,105	-		RR42_RS36270	0.21	-3.6
3,588,108	-		RR42_RS36270	0.21	-3.6
3,588,163	+		RR42_RS36270	0.24	-2.8
3,588,179	-		RR42_RS36270	0.25	-2.2
3,588,224	+		RR42_RS36270	0.26	-3.8
3,588,225	-		RR42_RS36270	0.27	-3.7
3,588,225	-		RR42_RS36270	0.27	-3.6
3,588,236	+		RR42_RS36270	0.27	-2.3
3,588,236	+		RR42_RS36270	0.27	-0.9
3,588,251	+		RR42_RS36270	0.28	-1.4
3,588,352	-		RR42_RS36270	0.32	-4.7
3,588,402	-		RR42_RS36270	0.34	-3.0
3,588,422	+		RR42_RS36270	0.35	-5.3
3,588,423	-		RR42_RS36270	0.35	-3.3
3,588,423	-		RR42_RS36270	0.35	-2.7
3,588,423	-		RR42_RS36270	0.35	-3.7
3,588,658	-		RR42_RS36270	0.45	-0.4
3,588,658	-		RR42_RS36270	0.45	-1.4
3,588,779	+		RR42_RS36270	0.50	-3.5
3,588,779	+		RR42_RS36270	0.50	+0.4
3,588,779	+		RR42_RS36270	0.50	-3.2
3,588,779	+		RR42_RS36270	0.50	-2.0
3,588,780	-		RR42_RS36270	0.50	-2.9
3,588,780	-		RR42_RS36270	0.50	-0.9
3,588,780	-		RR42_RS36270	0.50	-3.5
3,588,780	-		RR42_RS36270	0.50	-3.2
3,588,780	-		RR42_RS36270	0.50	-3.8
3,588,780	-		RR42_RS36270	0.50	-3.5
3,588,885	-		RR42_RS36270	0.55	-3.1
3,589,637	+		RR42_RS36270	0.87	-2.8
3,589,733	+				-2.2
3,589,990	+				-2.2
3,590,129	-				+0.9
3,590,143	+				+0.7
3,590,252	+				+0.4
3,590,252	+				+0.2
3,590,253	-				+0.1
3,590,253	-				+0.6
3,590,253	-				+0.6
3,590,253	-				-0.4
3,590,262	-				+1.9
3,590,351	+				+0.4
3,590,594	+		RR42_RS36275	0.24	+1.4
3,590,700	+		RR42_RS36275	0.35	+1.1
3,590,719	-		RR42_RS36275	0.37	+1.1
3,590,719	-		RR42_RS36275	0.37	+1.8
3,590,772	-		RR42_RS36275	0.42	+1.0
3,590,878	-		RR42_RS36275	0.53	+2.9