Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36265

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36260 and RR42_RS36265 overlap by 4 nucleotidesRR42_RS36265 and RR42_RS36270 overlap by 4 nucleotides RR42_RS36260: RR42_RS36260 - membrane protein, at 3,585,066 to 3,586,379 _RS36260 RR42_RS36265: RR42_RS36265 - esterase, at 3,586,376 to 3,587,611 _RS36265 RR42_RS36270: RR42_RS36270 - patatin, at 3,587,608 to 3,589,935 _RS36270 Position (kb) 3586 3587 3588Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3585.662 kb on + strand, within RR42_RS36260at 3585.663 kb on - strand, within RR42_RS36260at 3585.663 kb on - strand, within RR42_RS36260at 3585.663 kb on - strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.720 kb on + strand, within RR42_RS36260at 3585.721 kb on - strand, within RR42_RS36260at 3585.721 kb on - strand, within RR42_RS36260at 3585.721 kb on - strand, within RR42_RS36260at 3585.721 kb on - strand, within RR42_RS36260at 3585.721 kb on - strand, within RR42_RS36260at 3585.721 kb on - strand, within RR42_RS36260at 3585.721 kb on - strand, within RR42_RS36260at 3585.721 kb on - strand, within RR42_RS36260at 3585.889 kb on + strand, within RR42_RS36260at 3585.889 kb on + strand, within RR42_RS36260at 3585.889 kb on + strand, within RR42_RS36260at 3585.889 kb on + strand, within RR42_RS36260at 3585.890 kb on - strand, within RR42_RS36260at 3585.890 kb on - strand, within RR42_RS36260at 3585.890 kb on - strand, within RR42_RS36260at 3585.891 kb on + strand, within RR42_RS36260at 3585.891 kb on + strand, within RR42_RS36260at 3585.891 kb on + strand, within RR42_RS36260at 3585.891 kb on + strand, within RR42_RS36260at 3585.891 kb on + strand, within RR42_RS36260at 3585.892 kb on - strand, within RR42_RS36260at 3585.892 kb on - strand, within RR42_RS36260at 3585.892 kb on - strand, within RR42_RS36260at 3585.892 kb on - strand, within RR42_RS36260at 3585.929 kb on + strand, within RR42_RS36260at 3585.929 kb on + strand, within RR42_RS36260at 3585.930 kb on - strand, within RR42_RS36260at 3586.023 kb on + strand, within RR42_RS36260at 3586.024 kb on - strand, within RR42_RS36260at 3586.082 kb on - strand, within RR42_RS36260at 3586.121 kb on - strand, within RR42_RS36260at 3586.121 kb on - strand, within RR42_RS36260at 3586.208 kb on + strand, within RR42_RS36260at 3586.209 kb on - strand, within RR42_RS36260at 3586.580 kb on + strand, within RR42_RS36265at 3586.581 kb on - strand, within RR42_RS36265at 3586.581 kb on - strand, within RR42_RS36265at 3586.581 kb on - strand, within RR42_RS36265at 3586.601 kb on + strand, within RR42_RS36265at 3586.615 kb on + strand, within RR42_RS36265at 3586.615 kb on + strand, within RR42_RS36265at 3586.615 kb on + strand, within RR42_RS36265at 3586.616 kb on - strand, within RR42_RS36265at 3586.616 kb on - strand, within RR42_RS36265at 3586.616 kb on - strand, within RR42_RS36265at 3586.712 kb on + strand, within RR42_RS36265at 3586.712 kb on + strand, within RR42_RS36265at 3586.763 kb on + strand, within RR42_RS36265at 3587.075 kb on + strand, within RR42_RS36265at 3587.075 kb on + strand, within RR42_RS36265at 3587.076 kb on - strand, within RR42_RS36265at 3587.076 kb on - strand, within RR42_RS36265at 3587.076 kb on - strand, within RR42_RS36265at 3587.076 kb on - strand, within RR42_RS36265at 3587.181 kb on + strand, within RR42_RS36265at 3587.228 kb on + strand, within RR42_RS36265at 3587.228 kb on + strand, within RR42_RS36265at 3587.228 kb on + strand, within RR42_RS36265at 3587.330 kb on + strand, within RR42_RS36265at 3587.330 kb on + strand, within RR42_RS36265at 3587.330 kb on + strand, within RR42_RS36265at 3587.331 kb on - strand, within RR42_RS36265at 3587.633 kb on + strandat 3587.676 kb on - strandat 3587.694 kb on + strandat 3587.843 kb on + strand, within RR42_RS36270at 3587.843 kb on + strand, within RR42_RS36270at 3587.867 kb on + strand, within RR42_RS36270at 3587.867 kb on + strand, within RR42_RS36270at 3587.867 kb on + strand, within RR42_RS36270at 3587.868 kb on - strand, within RR42_RS36270at 3587.868 kb on - strand, within RR42_RS36270at 3587.868 kb on - strand, within RR42_RS36270at 3587.894 kb on + strand, within RR42_RS36270at 3587.926 kb on - strand, within RR42_RS36270at 3587.926 kb on - strand, within RR42_RS36270at 3587.973 kb on - strand, within RR42_RS36270at 3588.018 kb on - strand, within RR42_RS36270at 3588.104 kb on + strand, within RR42_RS36270at 3588.105 kb on - strand, within RR42_RS36270at 3588.105 kb on - strand, within RR42_RS36270at 3588.108 kb on - strand, within RR42_RS36270at 3588.163 kb on + strand, within RR42_RS36270at 3588.179 kb on - strand, within RR42_RS36270at 3588.224 kb on + strand, within RR42_RS36270at 3588.225 kb on - strand, within RR42_RS36270at 3588.225 kb on - strand, within RR42_RS36270at 3588.236 kb on + strand, within RR42_RS36270at 3588.236 kb on + strand, within RR42_RS36270at 3588.251 kb on + strand, within RR42_RS36270at 3588.352 kb on - strand, within RR42_RS36270at 3588.402 kb on - strand, within RR42_RS36270at 3588.422 kb on + strand, within RR42_RS36270at 3588.423 kb on - strand, within RR42_RS36270at 3588.423 kb on - strand, within RR42_RS36270at 3588.423 kb on - strand, within RR42_RS36270

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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3,585,662 + RR42_RS36260 0.45 -4.8
3,585,663 - RR42_RS36260 0.45 -2.9
3,585,663 - RR42_RS36260 0.45 -4.1
3,585,663 - RR42_RS36260 0.45 -1.4
3,585,720 + RR42_RS36260 0.50 +0.9
3,585,720 + RR42_RS36260 0.50 +2.1
3,585,720 + RR42_RS36260 0.50 -0.8
3,585,720 + RR42_RS36260 0.50 -0.2
3,585,720 + RR42_RS36260 0.50 -1.0
3,585,720 + RR42_RS36260 0.50 +0.7
3,585,720 + RR42_RS36260 0.50 -4.0
3,585,720 + RR42_RS36260 0.50 -3.3
3,585,720 + RR42_RS36260 0.50 +0.3
3,585,720 + RR42_RS36260 0.50 +0.3
3,585,720 + RR42_RS36260 0.50 +0.1
3,585,720 + RR42_RS36260 0.50 +0.7
3,585,721 - RR42_RS36260 0.50 -0.4
3,585,721 - RR42_RS36260 0.50 -3.4
3,585,721 - RR42_RS36260 0.50 -1.9
3,585,721 - RR42_RS36260 0.50 -2.8
3,585,721 - RR42_RS36260 0.50 -3.2
3,585,721 - RR42_RS36260 0.50 -3.6
3,585,721 - RR42_RS36260 0.50 -2.0
3,585,721 - RR42_RS36260 0.50 -2.9
3,585,889 + RR42_RS36260 0.63 -3.2
3,585,889 + RR42_RS36260 0.63 +0.3
3,585,889 + RR42_RS36260 0.63 -2.8
3,585,889 + RR42_RS36260 0.63 +0.6
3,585,890 - RR42_RS36260 0.63 -2.3
3,585,890 - RR42_RS36260 0.63 -2.4
3,585,890 - RR42_RS36260 0.63 -2.2
3,585,891 + RR42_RS36260 0.63 +1.6
3,585,891 + RR42_RS36260 0.63 +0.3
3,585,891 + RR42_RS36260 0.63 +1.9
3,585,891 + RR42_RS36260 0.63 +1.6
3,585,891 + RR42_RS36260 0.63 -0.9
3,585,892 - RR42_RS36260 0.63 -3.3
3,585,892 - RR42_RS36260 0.63 -3.2
3,585,892 - RR42_RS36260 0.63 -3.1
3,585,892 - RR42_RS36260 0.63 -3.6
3,585,929 + RR42_RS36260 0.66 +2.1
3,585,929 + RR42_RS36260 0.66 -1.9
3,585,930 - RR42_RS36260 0.66 -1.7
3,586,023 + RR42_RS36260 0.73 -4.6
3,586,024 - RR42_RS36260 0.73 -3.4
3,586,082 - RR42_RS36260 0.77 -2.4
3,586,121 - RR42_RS36260 0.80 -3.9
3,586,121 - RR42_RS36260 0.80 -4.4
3,586,208 + RR42_RS36260 0.87 -2.3
3,586,209 - RR42_RS36260 0.87 -0.4
3,586,580 + RR42_RS36265 0.17 -2.7
3,586,581 - RR42_RS36265 0.17 -3.5
3,586,581 - RR42_RS36265 0.17 -3.4
3,586,581 - RR42_RS36265 0.17 -3.9
3,586,601 + RR42_RS36265 0.18 -2.5
3,586,615 + RR42_RS36265 0.19 +0.1
3,586,615 + RR42_RS36265 0.19 -2.3
3,586,615 + RR42_RS36265 0.19 -0.2
3,586,616 - RR42_RS36265 0.19 -3.6
3,586,616 - RR42_RS36265 0.19 -2.6
3,586,616 - RR42_RS36265 0.19 -1.7
3,586,712 + RR42_RS36265 0.27 -2.7
3,586,712 + RR42_RS36265 0.27 -3.4
3,586,763 + RR42_RS36265 0.31 -3.2
3,587,075 + RR42_RS36265 0.57 -3.8
3,587,075 + RR42_RS36265 0.57 -4.1
3,587,076 - RR42_RS36265 0.57 -3.8
3,587,076 - RR42_RS36265 0.57 -3.1
3,587,076 - RR42_RS36265 0.57 -1.4
3,587,076 - RR42_RS36265 0.57 -2.2
3,587,181 + RR42_RS36265 0.65 +0.8
3,587,228 + RR42_RS36265 0.69 +0.7
3,587,228 + RR42_RS36265 0.69 +0.9
3,587,228 + RR42_RS36265 0.69 +0.5
3,587,330 + RR42_RS36265 0.77 -3.6
3,587,330 + RR42_RS36265 0.77 -2.4
3,587,330 + RR42_RS36265 0.77 -2.0
3,587,331 - RR42_RS36265 0.77 -0.9
3,587,633 + +0.1
3,587,676 - -3.3
3,587,694 + -2.6
3,587,843 + RR42_RS36270 0.10 -5.2
3,587,843 + RR42_RS36270 0.10 -3.7
3,587,867 + RR42_RS36270 0.11 -4.8
3,587,867 + RR42_RS36270 0.11 -4.3
3,587,867 + RR42_RS36270 0.11 -2.5
3,587,868 - RR42_RS36270 0.11 -3.5
3,587,868 - RR42_RS36270 0.11 -0.9
3,587,868 - RR42_RS36270 0.11 -3.1
3,587,894 + RR42_RS36270 0.12 -0.5
3,587,926 - RR42_RS36270 0.14 -2.0
3,587,926 - RR42_RS36270 0.14 -3.4
3,587,973 - RR42_RS36270 0.16 -1.4
3,588,018 - RR42_RS36270 0.18 -3.3
3,588,104 + RR42_RS36270 0.21 -3.4
3,588,105 - RR42_RS36270 0.21 -1.4
3,588,105 - RR42_RS36270 0.21 -3.6
3,588,108 - RR42_RS36270 0.21 -3.6
3,588,163 + RR42_RS36270 0.24 -2.8
3,588,179 - RR42_RS36270 0.25 -2.2
3,588,224 + RR42_RS36270 0.26 -3.8
3,588,225 - RR42_RS36270 0.27 -3.7
3,588,225 - RR42_RS36270 0.27 -3.6
3,588,236 + RR42_RS36270 0.27 -2.3
3,588,236 + RR42_RS36270 0.27 -0.9
3,588,251 + RR42_RS36270 0.28 -1.4
3,588,352 - RR42_RS36270 0.32 -4.7
3,588,402 - RR42_RS36270 0.34 -3.0
3,588,422 + RR42_RS36270 0.35 -5.3
3,588,423 - RR42_RS36270 0.35 -3.3
3,588,423 - RR42_RS36270 0.35 -2.7
3,588,423 - RR42_RS36270 0.35 -3.7

Or see this region's nucleotide sequence