Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36255

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,583,302	+		RR42_RS36250	0.69	+1.0
3,583,303	-		RR42_RS36250	0.69	+0.9
3,583,449	+		RR42_RS36250	0.79	+0.5
3,583,740	+				+1.3
3,583,740	+				+1.2
3,583,741	-				-1.6
3,583,993	+		RR42_RS36255	0.22	+0.1
3,583,993	+		RR42_RS36255	0.22	+0.6
3,583,994	-		RR42_RS36255	0.22	+0.7
3,583,994	-		RR42_RS36255	0.22	-0.1
3,584,113	+		RR42_RS36255	0.34	+2.1
3,584,113	+		RR42_RS36255	0.34	+1.8
3,584,113	+		RR42_RS36255	0.34	+1.2
3,584,114	-		RR42_RS36255	0.34	-0.6
3,584,114	-		RR42_RS36255	0.34	+0.6
3,584,114	-		RR42_RS36255	0.34	+0.4
3,584,114	-		RR42_RS36255	0.34	+1.3
3,584,197	+		RR42_RS36255	0.42	+0.9
3,584,198	-		RR42_RS36255	0.42	+1.1
3,584,198	-		RR42_RS36255	0.42	+0.3
3,584,213	+		RR42_RS36255	0.44	+1.0
3,584,262	-		RR42_RS36255	0.49	+0.2
3,584,315	-		RR42_RS36255	0.54	-1.7
3,584,354	+		RR42_RS36255	0.58	+1.2
3,584,354	+		RR42_RS36255	0.58	+1.1
3,584,354	+		RR42_RS36255	0.58	+2.9
3,584,422	+		RR42_RS36255	0.64	+1.3
3,584,422	+		RR42_RS36255	0.64	+1.6
3,584,422	+		RR42_RS36255	0.64	+1.8
3,584,437	+		RR42_RS36255	0.66	+1.7
3,584,438	-		RR42_RS36255	0.66	-1.1
3,584,488	+		RR42_RS36255	0.71	+2.1
3,584,489	-		RR42_RS36255	0.71	-0.2
3,584,489	-		RR42_RS36255	0.71	-0.4
3,584,549	+		RR42_RS36255	0.77	+1.0
3,584,549	+		RR42_RS36255	0.77	+1.9
3,584,549	+		RR42_RS36255	0.77	+2.1
3,584,549	+		RR42_RS36255	0.77	+0.6
3,584,550	-		RR42_RS36255	0.77	+0.9
3,584,550	-		RR42_RS36255	0.77	+1.4
3,584,551	+		RR42_RS36255	0.77	+1.4
3,584,551	+		RR42_RS36255	0.77	+1.3
3,584,551	+		RR42_RS36255	0.77	-0.2
3,584,551	+		RR42_RS36255	0.77	+2.8
3,584,552	-		RR42_RS36255	0.77	-1.3
3,584,760	+				+1.6
3,584,760	+				+0.9
3,584,761	-				-1.9
3,584,761	-				-2.0
3,584,767	+				+0.8
3,584,768	-				-3.9
3,584,768	-				+1.1
3,584,797	+				+1.5
3,584,798	-				-1.9
3,584,798	-				+0.5
3,584,799	+				+0.9
3,584,799	+				+1.1
3,584,799	+				+1.0
3,584,800	-				-3.1
3,584,800	-				-0.4
3,584,888	+				+1.4
3,584,889	-				-1.4
3,584,889	-				-3.4
3,584,903	+				+0.7
3,584,907	-				-3.4
3,584,921	+				+1.8
3,584,921	+				+1.2
3,584,921	+				+0.7
3,584,922	-				-2.4
3,584,922	-				-2.6
3,584,922	-				-3.5
3,584,941	+				+0.9
3,584,941	+				-0.9
3,584,941	+				+1.9
3,584,942	-				+1.4
3,584,942	-				+0.2
3,584,942	-				+0.1
3,584,942	-				+0.8
3,584,942	-				+1.5
3,585,002	+				+0.5
3,585,114	+				-1.9
3,585,114	+				+2.6
3,585,114	+				+1.2
3,585,115	-				-4.1
3,585,130	-				-2.7
3,585,171	+				+0.7
3,585,171	+				+3.0
3,585,171	+				+1.7
3,585,172	-				-3.4
3,585,172	-				-2.6
3,585,172	-				-1.7
3,585,173	+				-1.4
3,585,173	+				+0.6
3,585,173	+				-0.0
3,585,174	-				-4.7
3,585,174	-				-0.4
3,585,174	-				-1.2
3,585,174	-				-1.9
3,585,174	-				-5.6
3,585,662	+		RR42_RS36260	0.45	-4.8
3,585,663	-		RR42_RS36260	0.45	-2.9
3,585,663	-		RR42_RS36260	0.45	-4.1
3,585,663	-		RR42_RS36260	0.45	-1.4
3,585,720	+		RR42_RS36260	0.50	+0.9
3,585,720	+		RR42_RS36260	0.50	+2.1
3,585,720	+		RR42_RS36260	0.50	-0.8
3,585,720	+		RR42_RS36260	0.50	-0.2
3,585,720	+		RR42_RS36260	0.50	-1.0
3,585,720	+		RR42_RS36260	0.50	+0.7
3,585,720	+		RR42_RS36260	0.50	-4.0
3,585,720	+		RR42_RS36260	0.50	-3.3
3,585,720	+		RR42_RS36260	0.50	+0.3
3,585,720	+		RR42_RS36260	0.50	+0.3
3,585,720	+		RR42_RS36260	0.50	+0.1
3,585,720	+		RR42_RS36260	0.50	+0.7
3,585,721	-		RR42_RS36260	0.50	-0.4
3,585,721	-		RR42_RS36260	0.50	-3.4
3,585,721	-		RR42_RS36260	0.50	-1.9
3,585,721	-		RR42_RS36260	0.50	-2.8
3,585,721	-		RR42_RS36260	0.50	-3.2
3,585,721	-		RR42_RS36260	0.50	-3.6
3,585,721	-		RR42_RS36260	0.50	-2.0
3,585,721	-		RR42_RS36260	0.50	-2.9