Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36020

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,527,019	-		RR42_RS36010	0.61	-0.0
3,527,226	-				+0.7
3,527,299	+		RR42_RS36015	0.40	+0.8
3,527,300	-		RR42_RS36015	0.40	-0.5
3,527,300	-		RR42_RS36015	0.40	+0.7
3,527,300	-		RR42_RS36015	0.40	+1.3
3,527,319	+		RR42_RS36015	0.50	+1.0
3,527,319	+		RR42_RS36015	0.50	+0.4
3,527,354	+		RR42_RS36015	0.69	+0.3
3,527,396	-				+0.2
3,527,435	-				-0.6
3,527,493	+				+0.4
3,527,497	-				+0.0
3,527,524	+				-0.0
3,527,527	-				+0.1
3,527,541	+				+0.4
3,527,541	+				-2.5
3,527,541	+				-1.5
3,527,542	-				-0.8
3,527,542	-				+0.8
3,527,542	-				-1.7
3,527,542	-				-0.2
3,527,551	-				-0.1
3,527,566	+				-0.7
3,527,566	+				+1.7
3,527,567	-				+1.0
3,527,569	-				-0.3
3,527,569	-				+0.0
3,527,583	-				-0.6
3,527,646	+				+0.3
3,527,688	-				-0.3
3,527,729	+				-1.6
3,527,730	-				-0.4
3,527,736	+				+0.8
3,527,736	+				+0.1
3,527,737	-				+2.1
3,527,755	+				-0.2
3,527,765	-				+1.9
3,527,765	-				-1.5
3,527,765	-				+0.6
3,528,288	+		RR42_RS36020	0.43	-0.1
3,528,455	-		RR42_RS36020	0.57	-0.3
3,528,555	+		RR42_RS36020	0.66	+0.4
3,528,556	-		RR42_RS36020	0.66	+0.6
3,528,556	-		RR42_RS36020	0.66	-1.4
3,528,625	+		RR42_RS36020	0.72	+0.7
3,528,625	+		RR42_RS36020	0.72	-0.1
3,528,626	-		RR42_RS36020	0.72	+1.3
3,528,626	-		RR42_RS36020	0.72	-0.7
3,528,753	+		RR42_RS36020	0.83	-1.3
3,528,754	-		RR42_RS36020	0.83	-1.9
3,528,754	-		RR42_RS36020	0.83	+0.8
3,529,052	+				-0.9
3,529,053	-				-1.4
3,529,059	-				+0.4
3,529,210	+				-0.0
3,529,210	+				+0.7
3,529,211	-				-1.0
3,529,269	-				+0.6
3,529,273	+				+0.7
3,529,274	-				-3.3
3,529,274	-				+0.2
3,529,274	-				-0.6
3,529,277	+				-0.4
3,529,410	+				-0.9
3,529,411	-				-0.8
3,529,414	+				-1.7
3,529,422	-				-1.6
3,529,422	-				+0.2
3,529,469	+				+0.3
3,529,516	+				+0.3
3,529,516	+				-1.0
3,529,517	-				-0.4
3,529,517	-				+0.0
3,529,655	-				-1.2
3,529,655	-				-2.6
3,529,742	-				-1.2
3,529,909	+		RR42_RS36025	0.18	-0.7
3,529,909	+		RR42_RS36025	0.18	+1.1
3,529,910	-		RR42_RS36025	0.18	-1.3
3,529,910	-		RR42_RS36025	0.18	-0.1