Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35890

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,498,878	+		RR42_RS35880	0.86	+0.3
3,499,012	-				+1.4
3,499,012	-				-0.8
3,499,051	+				-0.9
3,499,052	-				-1.2
3,499,052	-				-0.1
3,499,056	+				-0.9
3,499,131	+				-0.6
3,499,189	+				-0.1
3,499,189	+				+0.5
3,499,190	-				+0.2
3,499,232	+				+0.0
3,499,232	+				+0.8
3,499,233	-				-0.9
3,499,233	-				-0.0
3,499,233	-				-0.1
3,499,375	-				-0.3
3,499,642	+		RR42_RS35885	0.70	+2.3
3,499,790	+				-1.8
3,499,790	+				-0.4
3,499,790	+				+1.3
3,499,797	-				+0.1
3,499,810	+				+1.4
3,499,810	+				+0.4
3,499,810	+				+0.3
3,499,811	-				+0.2
3,499,811	-				-1.7
3,499,811	-				-0.2
3,499,811	-				-0.8
3,499,811	-				-0.1
3,500,132	+		RR42_RS35890	0.30	-0.4
3,500,132	+		RR42_RS35890	0.30	-1.1
3,500,132	+		RR42_RS35890	0.30	-0.1
3,500,133	-		RR42_RS35890	0.30	-0.0
3,500,133	-		RR42_RS35890	0.30	-0.0
3,500,144	-		RR42_RS35890	0.31	+1.3
3,500,199	-		RR42_RS35890	0.37	+0.7
3,500,199	-		RR42_RS35890	0.37	+0.6
3,500,199	-		RR42_RS35890	0.37	-0.0
3,500,438	+		RR42_RS35890	0.60	+0.6
3,500,438	+		RR42_RS35890	0.60	-0.2
3,500,438	+		RR42_RS35890	0.60	+0.7
3,500,438	+		RR42_RS35890	0.60	+0.5
3,500,439	-		RR42_RS35890	0.61	+1.0
3,500,531	+		RR42_RS35890	0.70	-1.9
3,500,531	+		RR42_RS35890	0.70	-0.2
3,500,531	+		RR42_RS35890	0.70	+0.5
3,500,532	-		RR42_RS35890	0.70	+0.1
3,500,546	-		RR42_RS35890	0.71	+0.5
3,500,564	+		RR42_RS35890	0.73	+0.4
3,500,564	+		RR42_RS35890	0.73	+0.2
3,500,564	+		RR42_RS35890	0.73	+0.3
3,500,564	+		RR42_RS35890	0.73	+0.5
3,500,564	+		RR42_RS35890	0.73	-0.0
3,500,564	+		RR42_RS35890	0.73	-0.9
3,500,565	-		RR42_RS35890	0.73	-2.0
3,500,713	-		RR42_RS35890	0.88	+0.8
3,500,753	+				+0.8
3,500,754	-				-1.2
3,500,754	-				-0.5
3,500,798	+				-0.6
3,500,799	-				-0.9
3,500,895	+				-0.7
3,500,895	+				+0.7
3,500,983	+				+0.4
3,501,033	+		RR42_RS35895	0.13	+0.8
3,501,123	+		RR42_RS35895	0.29	-2.3
3,501,123	+		RR42_RS35895	0.29	-0.8
3,501,123	+		RR42_RS35895	0.29	-0.5
3,501,123	+		RR42_RS35895	0.29	-2.0
3,501,124	-		RR42_RS35895	0.29	+0.3
3,501,124	-		RR42_RS35895	0.29	-1.3
3,501,304	-		RR42_RS35895	0.62	+1.1
3,501,418	-		RR42_RS35895	0.83	-2.0
3,501,550	+				+0.6
3,501,590	+				+1.7
3,501,697	-				-1.0
3,501,697	-				-1.3
3,501,710	+				-0.1
3,501,711	-				-3.5
3,501,734	-				-2.5
3,501,734	-				-1.9
3,501,734	-				-3.5
3,501,734	-				-3.5
3,501,747	+				+0.1
3,501,747	+				-2.0
3,501,747	+				+0.1
3,501,748	-				-2.5