Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35445

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,404,260	+				+1.1
3,404,260	+				-0.4
3,404,261	-				-0.5
3,404,261	-				+0.6
3,404,261	-				+0.4
3,404,472	+		RR42_RS35440	0.24	-0.4
3,404,575	+		RR42_RS35440	0.36	+0.6
3,404,576	-		RR42_RS35440	0.36	-0.4
3,404,576	-		RR42_RS35440	0.36	+2.7
3,404,675	-		RR42_RS35440	0.47	+0.1
3,404,692	-		RR42_RS35440	0.49	+1.1
3,404,693	+		RR42_RS35440	0.49	-0.6
3,404,693	+		RR42_RS35440	0.49	-0.2
3,404,693	+		RR42_RS35440	0.49	-0.9
3,404,694	-		RR42_RS35440	0.49	-1.1
3,404,888	-		RR42_RS35440	0.72	+0.9
3,404,888	-		RR42_RS35440	0.72	-0.9
3,405,019	+		RR42_RS35440	0.87	-1.2
3,405,020	-		RR42_RS35440	0.87	-0.4
3,405,020	-		RR42_RS35440	0.87	+0.3
3,405,068	-				-1.4
3,405,076	+				+0.8
3,405,076	+				-0.3
3,405,076	+				+2.0
3,405,077	-				+1.9
3,405,077	-				-0.7
3,405,077	-				-0.6
3,405,156	+				+0.1
3,405,157	-				-0.8
3,405,328	+		RR42_RS35445	0.35	+0.8
3,405,328	+		RR42_RS35445	0.35	+2.9
3,405,462	+		RR42_RS35445	0.77	-0.3
3,405,463	-		RR42_RS35445	0.77	+0.8
3,405,463	-		RR42_RS35445	0.77	+1.6
3,405,534	+				-0.2
3,405,535	-				+0.2
3,405,535	-				+0.1
3,405,546	+				+0.4
3,405,546	+				-0.6
3,405,546	+				-0.7
3,405,547	-				+1.0
3,405,564	+				-1.0
3,405,783	+		RR42_RS35450	0.54	+1.2
3,405,875	+		RR42_RS35450	0.75	-0.8
3,405,957	-				-1.8
3,406,066	-		RR42_RS35455	0.19	-0.9
3,406,131	+		RR42_RS35455	0.34	-0.2
3,406,131	+		RR42_RS35455	0.34	+0.9
3,406,131	+		RR42_RS35455	0.34	+0.1
3,406,132	-		RR42_RS35455	0.34	+0.9
3,406,191	+		RR42_RS35455	0.48	-0.3
3,406,191	+		RR42_RS35455	0.48	+0.3
3,406,221	+		RR42_RS35455	0.55	+0.1
3,406,222	-		RR42_RS35455	0.55	+0.2
3,406,412	+				+1.1
3,406,412	+				-0.0
3,406,413	-				-0.2
3,406,413	-				-2.1
3,406,463	+				-0.6
3,406,464	-				+0.1
3,406,487	+				+0.3
3,406,488	-				+0.3
3,406,488	-				+0.4