Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35425

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,399,449	+				-0.3
3,399,450	-				-0.0
3,399,450	-				+0.1
3,399,466	+				-0.0
3,399,478	-				+0.5
3,399,558	+				-0.3
3,399,749	+		RR42_RS35420	0.15	+0.1
3,399,749	+		RR42_RS35420	0.15	-2.0
3,399,750	-		RR42_RS35420	0.15	-0.3
3,399,753	+		RR42_RS35420	0.16	+0.3
3,399,753	+		RR42_RS35420	0.16	+2.4
3,399,753	+		RR42_RS35420	0.16	+1.9
3,399,753	+		RR42_RS35420	0.16	-0.7
3,399,754	-		RR42_RS35420	0.16	+1.5
3,399,754	-		RR42_RS35420	0.16	+0.5
3,399,754	-		RR42_RS35420	0.16	+0.1
3,399,754	-		RR42_RS35420	0.16	-0.5
3,399,754	-		RR42_RS35420	0.16	+0.4
3,399,754	-		RR42_RS35420	0.16	+0.5
3,399,754	-		RR42_RS35420	0.16	+1.1
3,399,754	-		RR42_RS35420	0.16	+0.6
3,399,754	-		RR42_RS35420	0.16	-0.7
3,399,754	-		RR42_RS35420	0.16	+0.1
3,399,754	-		RR42_RS35420	0.16	+0.3
3,399,921	-		RR42_RS35420	0.42	+0.1
3,399,921	-		RR42_RS35420	0.42	-0.4
3,399,921	-		RR42_RS35420	0.42	-0.6
3,399,925	-		RR42_RS35420	0.43	+0.8
3,400,153	+		RR42_RS35420	0.78	+0.3
3,400,215	+		RR42_RS35420	0.88	+1.1
3,400,216	-		RR42_RS35420	0.88	-0.8
3,400,302	-				+0.6
3,400,316	-				-0.3
3,400,357	+				-2.6
3,400,357	+				+1.7
3,400,357	+				-0.2
3,400,358	-				+0.1
3,400,358	-				-0.1
3,400,358	-				+0.4
3,400,368	-				-3.1
3,400,414	+				-0.3
3,400,414	+				+0.8
3,400,414	+				-0.5
3,400,415	-				+1.8
3,400,415	-				+0.3
3,400,543	-		RR42_RS35425	0.24	+0.5
3,400,601	+		RR42_RS35425	0.35	+0.6
3,400,777	+		RR42_RS35425	0.68	-0.1
3,400,778	-		RR42_RS35425	0.69	-0.5
3,400,810	+		RR42_RS35425	0.75	-0.3
3,400,810	+		RR42_RS35425	0.75	-0.4
3,400,929	+				+0.8
3,401,026	+				-1.5
3,401,026	+				-0.3
3,401,065	-				-0.5
3,401,120	+				+0.1
3,401,225	+				-0.0
3,401,225	+				-0.1
3,401,225	+				+0.6
3,401,226	-				-0.3
3,401,234	+				-0.4
3,401,234	+				+1.5
3,401,235	-				-0.1
3,401,235	-				+0.0
3,401,270	-				-0.6
3,401,279	-				-0.5
3,401,486	+				+0.2
3,401,487	-				+1.2
3,401,534	+				+2.2
3,401,534	+				+1.5
3,401,535	-				+0.8
3,401,535	-				-0.3
3,401,545	+				+0.3
3,401,594	-		RR42_RS35430	0.18	-0.6
3,401,594	-		RR42_RS35430	0.18	+0.0
3,401,622	+		RR42_RS35430	0.25	+0.2
3,401,623	-		RR42_RS35430	0.25	+1.0
3,401,623	-		RR42_RS35430	0.25	+0.7
3,401,623	-		RR42_RS35430	0.25	-0.1
3,401,625	+		RR42_RS35430	0.26	+0.0
3,401,625	+		RR42_RS35430	0.26	-0.1
3,401,626	-		RR42_RS35430	0.26	+1.4
3,401,714	+		RR42_RS35430	0.49	+0.4
3,401,714	+		RR42_RS35430	0.49	+2.9
3,401,718	+		RR42_RS35430	0.50	-0.3
3,401,719	-		RR42_RS35430	0.50	+1.8
3,401,719	-		RR42_RS35430	0.50	-0.2
3,401,764	+		RR42_RS35430	0.62	-0.4
3,401,780	+		RR42_RS35430	0.66	+0.3
3,401,780	+		RR42_RS35430	0.66	+0.3
3,401,780	+		RR42_RS35430	0.66	-0.7
3,401,780	+		RR42_RS35430	0.66	+1.1
3,401,781	-		RR42_RS35430	0.67	+1.7
3,401,781	-		RR42_RS35430	0.67	+0.6
3,401,781	-		RR42_RS35430	0.67	-0.8
3,401,831	-		RR42_RS35430	0.80	+0.2
3,401,859	-		RR42_RS35430	0.87	-1.9
3,401,859	-		RR42_RS35430	0.87	+1.2
3,401,871	+				+0.3
3,401,872	-				-1.7