Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35065

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,318,836	+		RR42_RS35060	0.60	+1.3
3,318,836	+		RR42_RS35060	0.60	+0.6
3,318,836	+		RR42_RS35060	0.60	+0.1
3,318,837	-		RR42_RS35060	0.61	+1.9
3,318,837	-		RR42_RS35060	0.61	+1.2
3,319,201	+				-0.5
3,319,202	-				-1.1
3,319,202	-				+1.5
3,319,312	-				+0.1
3,319,312	-				-1.3
3,319,312	-				+0.1
3,319,342	+				+0.3
3,319,342	+				+1.3
3,319,342	+				-0.4
3,319,343	-				-1.8
3,319,343	-				-0.0
3,319,343	-				-0.8
3,319,565	+				+1.4
3,319,565	+				+0.1
3,319,565	+				-0.9
3,319,565	+				+1.1
3,319,566	-				+0.6
3,319,566	-				-1.3
3,319,566	-				-0.4
3,319,566	-				+0.7
3,319,566	-				-3.2
3,319,566	-				-1.3
3,319,653	+				-1.1
3,319,653	+				+0.2
3,319,654	-				+0.6
3,319,761	+		RR42_RS35065	0.21	+0.6
3,319,762	-		RR42_RS35065	0.21	-0.4
3,319,762	-		RR42_RS35065	0.21	-1.7
3,319,777	+		RR42_RS35065	0.24	+1.1
3,319,778	-		RR42_RS35065	0.24	+0.8
3,319,850	+		RR42_RS35065	0.34	+0.1
3,320,104	+		RR42_RS35065	0.70	-0.4
3,320,104	+		RR42_RS35065	0.70	-0.1
3,320,309	+				-0.3
3,320,310	-				-1.9
3,320,310	-				-0.9
3,320,310	-				+0.4
3,320,310	-				-1.6
3,320,311	+				-0.9
3,320,312	-				-0.9
3,320,312	-				-0.6
3,320,364	-				+1.1
3,320,364	-				+0.2
3,320,364	-				+1.9
3,320,364	-				+0.8
3,320,785	+		RR42_RS35070	0.25	+1.9
3,320,941	+		RR42_RS35070	0.37	-0.3
3,320,941	+		RR42_RS35070	0.37	-0.8
3,320,941	+		RR42_RS35070	0.37	+1.2
3,320,941	+		RR42_RS35070	0.37	-1.2
3,320,941	+		RR42_RS35070	0.37	-0.2
3,320,942	-		RR42_RS35070	0.37	+0.6
3,320,942	-		RR42_RS35070	0.37	-1.2
3,320,942	-		RR42_RS35070	0.37	-0.8
3,320,942	-		RR42_RS35070	0.37	-0.1
3,320,942	-		RR42_RS35070	0.37	+0.6
3,320,942	-		RR42_RS35070	0.37	+0.2
3,321,214	+		RR42_RS35070	0.59	-0.8
3,321,215	-		RR42_RS35070	0.59	+1.9
3,321,215	-		RR42_RS35070	0.59	-0.3
3,321,268	+		RR42_RS35070	0.63	-0.2
3,321,269	-		RR42_RS35070	0.63	-1.5