Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34990

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,300,611	+		RR42_RS34985	0.13	+0.0
3,300,930	-		RR42_RS34985	0.42	+0.1
3,301,420	-		RR42_RS34985	0.86	-1.5
3,301,421	+		RR42_RS34985	0.86	-0.4
3,301,421	+		RR42_RS34985	0.86	-0.3
3,301,421	+		RR42_RS34985	0.86	-0.9
3,301,421	+		RR42_RS34985	0.86	-0.4
3,301,421	+		RR42_RS34985	0.86	-1.1
3,301,422	-		RR42_RS34985	0.86	+0.1
3,301,422	-		RR42_RS34985	0.86	-0.4
3,301,422	-		RR42_RS34985	0.86	+1.3
3,301,428	-		RR42_RS34985	0.87	-1.9
3,301,619	-				-2.6
3,301,622	+				+0.4
3,301,623	-				+0.3
3,301,623	-				+0.6
3,301,865	+		RR42_RS34990	0.21	+1.4
3,302,221	+		RR42_RS34990	0.46	+0.9
3,302,221	+		RR42_RS34990	0.46	-0.5
3,302,503	+		RR42_RS34990	0.67	+0.2
3,302,504	-		RR42_RS34990	0.67	-0.4
3,302,587	+		RR42_RS34990	0.73	+0.8
3,302,742	-		RR42_RS34990	0.84	+1.1
3,302,744	-		RR42_RS34990	0.84	-0.5
3,302,886	-				-0.5
3,302,886	-				-0.2
3,302,886	-				+0.5
3,302,886	-				-0.8
3,302,887	+				+0.9
3,302,887	+				-0.9
3,302,887	+				-1.8
3,302,887	+				+1.2
3,302,888	-				-0.3
3,302,888	-				+0.9
3,302,888	-				+0.1
3,303,149	+		RR42_RS34995	0.22	-0.8
3,303,149	+		RR42_RS34995	0.22	-1.9
3,303,150	-		RR42_RS34995	0.22	+1.5
3,303,150	-		RR42_RS34995	0.22	+0.9
3,303,152	+		RR42_RS34995	0.22	+0.5
3,303,153	-		RR42_RS34995	0.23	-0.1
3,303,153	-		RR42_RS34995	0.23	-0.9
3,303,153	-		RR42_RS34995	0.23	+0.9
3,303,153	-		RR42_RS34995	0.23	-1.9
3,303,153	-		RR42_RS34995	0.23	-1.0
3,303,212	+		RR42_RS34995	0.33	-0.7
3,303,212	+		RR42_RS34995	0.33	-1.4
3,303,213	-		RR42_RS34995	0.33	+0.3
3,303,213	-		RR42_RS34995	0.33	+0.3
3,303,213	-		RR42_RS34995	0.33	+1.5
3,303,237	-		RR42_RS34995	0.38	-1.0
3,303,311	+		RR42_RS34995	0.51	+0.5
3,303,312	-		RR42_RS34995	0.51	-1.3
3,303,312	-		RR42_RS34995	0.51	+0.1
3,303,390	-		RR42_RS34995	0.65	-0.7
3,303,556	-				-0.0
3,303,556	-				-0.0
3,303,556	-				+0.3
3,303,696	+				+0.3
3,303,696	+				+0.1
3,303,821	-				-0.2