Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34705

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,224,946	-		RR42_RS34700	0.20	+0.1
3,225,308	-		RR42_RS34700	0.58	-0.1
3,225,335	+		RR42_RS34700	0.61	-0.1
3,225,335	+		RR42_RS34700	0.61	+0.6
3,225,335	+		RR42_RS34700	0.61	-0.6
3,225,336	-		RR42_RS34700	0.61	-0.5
3,225,482	+		RR42_RS34700	0.76	+0.1
3,225,694	+				-1.3
3,225,694	+				+0.2
3,225,694	+				-0.3
3,225,694	+				-0.6
3,225,694	+				-0.6
3,225,695	-				-0.4
3,225,695	-				+0.2
3,225,900	+				-0.8
3,225,907	-				+1.5
3,226,187	-		RR42_RS34705	0.15	-0.6
3,226,557	+		RR42_RS34705	0.31	-1.1
3,226,557	+		RR42_RS34705	0.31	-0.1
3,226,558	-		RR42_RS34705	0.31	-0.7
3,226,812	+		RR42_RS34705	0.42	+1.0
3,227,307	+		RR42_RS34705	0.64	+0.5
3,227,661	-		RR42_RS34705	0.80	+0.7
3,228,037	+				-0.3
3,228,056	-				-0.1
3,228,148	+				+0.0
3,228,149	-				+0.2
3,228,149	-				-0.7
3,228,223	+				+0.4
3,228,670	-				+0.8
3,228,670	-				+1.0
3,228,765	+				+0.9
3,228,766	-				-1.3
3,228,774	+				+1.0
3,228,775	-				+0.2
3,228,775	-				+0.5
3,228,781	-				+0.4
3,228,996	+				+0.4
3,229,074	-				+1.2