Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33995

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,054,526	+		RR42_RS33990	0.20	-0.6
3,054,527	-		RR42_RS33990	0.20	-0.9
3,054,527	-		RR42_RS33990	0.20	-1.3
3,054,650	-		RR42_RS33990	0.36	+1.1
3,054,650	-		RR42_RS33990	0.36	-1.3
3,054,650	-		RR42_RS33990	0.36	-0.1
3,054,762	+		RR42_RS33990	0.50	-0.3
3,054,762	+		RR42_RS33990	0.50	-0.4
3,054,930	+		RR42_RS33990	0.71	+0.1
3,054,930	+		RR42_RS33990	0.71	-1.3
3,054,930	+		RR42_RS33990	0.71	-0.8
3,054,931	-		RR42_RS33990	0.71	-1.6
3,054,931	-		RR42_RS33990	0.71	+0.4
3,054,934	-		RR42_RS33990	0.71	+1.6
3,054,934	-		RR42_RS33990	0.71	+0.2
3,055,086	-				-1.5
3,055,086	-				-0.4
3,055,098	+				+0.9
3,055,099	-				-0.7
3,055,202	+				-3.8
3,055,202	+				-0.5
3,055,202	+				-0.3
3,055,202	+				-0.9
3,055,205	+				-0.2
3,055,205	+				-0.1
3,055,206	-				-1.6
3,055,267	-				+0.4
3,055,267	-				-0.8
3,055,267	-				+1.2
3,055,267	-				-0.7
3,055,437	+				+0.4
3,055,437	+				-0.8
3,055,437	+				+1.0
3,055,527	+				+0.9
3,055,527	+				+0.6
3,055,528	-				-0.3
3,055,619	-		RR42_RS33995	0.10	-0.2
3,055,676	+		RR42_RS33995	0.17	-0.5
3,055,676	+		RR42_RS33995	0.17	-0.8
3,055,677	-		RR42_RS33995	0.17	-0.2
3,055,677	-		RR42_RS33995	0.17	-0.6
3,055,677	-		RR42_RS33995	0.17	-0.0
3,055,719	-		RR42_RS33995	0.21	+0.1
3,055,719	-		RR42_RS33995	0.21	-0.1
3,055,898	-		RR42_RS33995	0.41	-1.6
3,055,898	-		RR42_RS33995	0.41	-0.4
3,055,909	+		RR42_RS33995	0.42	+0.9
3,055,909	+		RR42_RS33995	0.42	-0.5
3,055,909	+		RR42_RS33995	0.42	-1.2
3,055,910	-		RR42_RS33995	0.43	+0.9
3,055,910	-		RR42_RS33995	0.43	-0.2
3,055,911	+		RR42_RS33995	0.43	+0.1
3,055,911	+		RR42_RS33995	0.43	-0.6
3,055,911	+		RR42_RS33995	0.43	+0.1
3,055,912	-		RR42_RS33995	0.43	+1.3
3,055,912	-		RR42_RS33995	0.43	+0.5
3,055,912	-		RR42_RS33995	0.43	+0.1
3,055,912	-		RR42_RS33995	0.43	-0.5
3,055,945	+		RR42_RS33995	0.46	+1.9
3,055,945	+		RR42_RS33995	0.46	-1.6
3,055,945	+		RR42_RS33995	0.46	-0.3
3,055,946	-		RR42_RS33995	0.47	+1.0
3,056,009	-		RR42_RS33995	0.53	+0.1
3,056,009	-		RR42_RS33995	0.53	-0.6
3,056,019	+		RR42_RS33995	0.55	+0.1
3,056,019	+		RR42_RS33995	0.55	+1.4
3,056,075	+		RR42_RS33995	0.61	-0.7
3,056,076	-		RR42_RS33995	0.61	+0.4
3,056,087	+		RR42_RS33995	0.62	+0.0
3,056,132	+		RR42_RS33995	0.67	+0.2
3,056,132	+		RR42_RS33995	0.67	+0.8
3,056,132	+		RR42_RS33995	0.67	-0.6
3,056,136	+		RR42_RS33995	0.68	+0.2
3,056,136	+		RR42_RS33995	0.68	+0.5
3,056,137	-		RR42_RS33995	0.68	+0.2
3,056,137	-		RR42_RS33995	0.68	-0.7
3,056,217	+		RR42_RS33995	0.77	-0.2
3,056,218	-		RR42_RS33995	0.77	-0.4
3,056,218	-		RR42_RS33995	0.77	+0.5
3,056,218	-		RR42_RS33995	0.77	-0.8
3,056,218	-		RR42_RS33995	0.77	+0.0
3,056,218	-		RR42_RS33995	0.77	-1.0
3,056,304	+		RR42_RS33995	0.86	+0.4
3,056,304	+		RR42_RS33995	0.86	-0.1
3,056,305	-		RR42_RS33995	0.86	+0.5
3,056,330	+		RR42_RS33995	0.89	+0.5
3,056,331	-		RR42_RS33995	0.89	+0.1
3,056,331	-		RR42_RS33995	0.89	-0.9
3,056,445	-				-2.5
3,056,503	-				-0.6
3,056,537	-				+0.2
3,056,631	+				-0.1
3,056,632	-				+1.1
3,056,641	+				-1.3
3,056,642	-				-0.7
3,056,662	-				-0.0
3,056,662	-				-0.3
3,056,689	+				+1.0
3,056,690	-				-0.0
3,056,742	+				+0.2
3,056,850	+				+0.8
3,056,850	+				-0.7
3,056,851	-				+0.9
3,056,851	-				+0.4
3,056,851	-				-0.4
3,056,851	-				+0.8
3,056,942	+		RR42_RS34000	0.16	-0.1
3,057,057	+		RR42_RS34000	0.43	+0.3
3,057,057	+		RR42_RS34000	0.43	-0.0
3,057,057	+		RR42_RS34000	0.43	-1.3
3,057,140	+		RR42_RS34000	0.62	-1.3
3,057,140	+		RR42_RS34000	0.62	+0.5
3,057,143	+		RR42_RS34000	0.63	+1.0
3,057,143	+		RR42_RS34000	0.63	-0.0
3,057,143	+		RR42_RS34000	0.63	-0.2
3,057,143	+		RR42_RS34000	0.63	-0.2
3,057,143	+		RR42_RS34000	0.63	+0.7
3,057,144	-		RR42_RS34000	0.63	+0.2
3,057,231	+		RR42_RS34000	0.83	+0.4
3,057,232	-		RR42_RS34000	0.84	+1.3
3,057,301	+				-1.9
3,057,301	+				+0.3
3,057,301	+				-0.2
3,057,301	+				+1.0
3,057,301	+				+0.7
3,057,302	-				+0.1
3,057,302	-				+0.3
3,057,302	-				-0.8
3,057,302	-				-0.3
3,057,302	-				+1.1
3,057,302	-				-1.7