Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33795

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,010,919	+		RR42_RS33790	0.42	+0.3
3,011,084	+		RR42_RS33790	0.53	+0.6
3,011,084	+		RR42_RS33790	0.53	+2.5
3,011,085	-		RR42_RS33790	0.53	+0.8
3,011,146	+		RR42_RS33790	0.58	-0.2
3,011,146	+		RR42_RS33790	0.58	+0.8
3,011,147	-		RR42_RS33790	0.58	+0.2
3,011,297	+		RR42_RS33790	0.68	-0.0
3,011,300	+		RR42_RS33790	0.68	+0.3
3,011,301	-		RR42_RS33790	0.68	+0.3
3,011,301	-		RR42_RS33790	0.68	-0.1
3,011,374	+		RR42_RS33790	0.73	-1.0
3,011,374	+		RR42_RS33790	0.73	+1.5
3,011,374	+		RR42_RS33790	0.73	+1.5
3,011,374	+		RR42_RS33790	0.73	-0.4
3,011,375	-		RR42_RS33790	0.74	+1.0
3,011,522	+		RR42_RS33790	0.84	+0.8
3,011,522	+		RR42_RS33790	0.84	+0.3
3,011,522	+		RR42_RS33790	0.84	-1.6
3,011,522	+		RR42_RS33790	0.84	+0.1
3,011,523	-		RR42_RS33790	0.84	+0.7
3,011,525	+		RR42_RS33790	0.84	-0.7
3,011,525	+		RR42_RS33790	0.84	+0.1
3,011,558	+		RR42_RS33790	0.86	-0.0
3,011,558	+		RR42_RS33790	0.86	-1.4
3,011,559	-		RR42_RS33790	0.86	+0.4
3,011,720	+				-0.1
3,011,729	+				-0.2
3,011,826	+				-0.1
3,012,174	+		RR42_RS33795	0.23	-1.0
3,012,217	-		RR42_RS33795	0.27	+0.4
3,012,229	+		RR42_RS33795	0.28	-1.6
3,012,633	+		RR42_RS33795	0.60	-0.2
3,012,634	-		RR42_RS33795	0.60	+0.5
3,012,634	-		RR42_RS33795	0.60	-0.6
3,012,643	-		RR42_RS33795	0.61	+0.1
3,012,714	+		RR42_RS33795	0.66	+0.2
3,012,715	-		RR42_RS33795	0.66	-0.4
3,013,092	+				+0.0
3,013,154	+				-0.9
3,013,202	+		RR42_RS33800	0.10	-0.6
3,013,202	+		RR42_RS33800	0.10	+0.4
3,013,337	+		RR42_RS33800	0.30	-0.6
3,013,337	+		RR42_RS33800	0.30	-1.8
3,013,337	+		RR42_RS33800	0.30	+0.3
3,013,338	-		RR42_RS33800	0.30	+1.5
3,013,338	-		RR42_RS33800	0.30	-0.1
3,013,338	-		RR42_RS33800	0.30	+1.5
3,013,338	-		RR42_RS33800	0.30	-1.4
3,013,469	+		RR42_RS33800	0.50	-1.3
3,013,470	-		RR42_RS33800	0.50	+0.5
3,013,470	-		RR42_RS33800	0.50	+0.4
3,013,470	-		RR42_RS33800	0.50	+0.4
3,013,491	-		RR42_RS33800	0.53	+1.7