Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33495

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,928,961	-		RR42_RS33490	0.24	+1.6
2,929,025	+		RR42_RS33490	0.30	+0.6
2,929,025	+		RR42_RS33490	0.30	+0.3
2,929,026	-		RR42_RS33490	0.30	-0.1
2,929,189	+		RR42_RS33490	0.43	+0.9
2,929,233	-		RR42_RS33490	0.47	-0.2
2,929,428	-		RR42_RS33490	0.63	+0.3
2,929,433	+		RR42_RS33490	0.63	+2.3
2,929,433	+		RR42_RS33490	0.63	+0.2
2,929,523	+		RR42_RS33490	0.71	+1.1
2,929,523	+		RR42_RS33490	0.71	-0.7
2,929,524	-		RR42_RS33490	0.71	+0.4
2,929,679	+		RR42_RS33490	0.84	+0.0
2,929,766	+				+0.8
2,929,794	-				-0.7
2,929,877	+				+1.0
2,929,877	+				+0.8
2,929,878	-				+1.3
2,929,940	-				+2.9
2,929,999	+				-0.5
2,930,000	-				-1.9
2,930,038	+				+0.2
2,930,068	+				-0.5
2,930,068	+				-0.1
2,930,069	-				-1.2
2,930,069	-				+1.2
2,930,077	+				-1.8
2,930,077	+				-1.7
2,930,078	-		RR42_RS33495	0.10	+0.3
2,930,078	-		RR42_RS33495	0.10	-1.0
2,930,084	+		RR42_RS33495	0.10	+0.5
2,930,110	+		RR42_RS33495	0.12	-0.7
2,930,110	+		RR42_RS33495	0.12	-1.1
2,930,110	+		RR42_RS33495	0.12	-2.2
2,930,110	+		RR42_RS33495	0.12	+0.4
2,930,110	+		RR42_RS33495	0.12	-0.7
2,930,110	+		RR42_RS33495	0.12	-1.0
2,930,110	+		RR42_RS33495	0.12	-0.3
2,930,110	+		RR42_RS33495	0.12	-1.9
2,930,111	-		RR42_RS33495	0.12	+0.1
2,930,111	-		RR42_RS33495	0.12	-1.8
2,930,111	-		RR42_RS33495	0.12	-0.1
2,930,276	-		RR42_RS33495	0.24	-1.9
2,930,276	-		RR42_RS33495	0.24	+1.1
2,930,276	-		RR42_RS33495	0.24	-0.5
2,930,416	+		RR42_RS33495	0.34	-0.4
2,930,416	+		RR42_RS33495	0.34	-0.7
2,930,417	-		RR42_RS33495	0.34	-0.6
2,930,417	-		RR42_RS33495	0.34	+0.2
2,930,431	+		RR42_RS33495	0.35	+0.5
2,930,584	+		RR42_RS33495	0.46	-0.9
2,930,584	+		RR42_RS33495	0.46	+0.9
2,930,585	-		RR42_RS33495	0.46	-0.3
2,930,585	-		RR42_RS33495	0.46	-1.7
2,930,585	-		RR42_RS33495	0.46	-0.1
2,930,603	-		RR42_RS33495	0.48	-0.9
2,930,812	+		RR42_RS33495	0.63	-0.8
2,930,957	+		RR42_RS33495	0.73	+0.4
2,930,972	-		RR42_RS33495	0.74	+0.0
2,930,980	+		RR42_RS33495	0.75	-0.2
2,930,980	+		RR42_RS33495	0.75	-0.3
2,930,980	+		RR42_RS33495	0.75	-0.8
2,930,980	+		RR42_RS33495	0.75	-1.0
2,930,980	+		RR42_RS33495	0.75	-0.6
2,930,980	+		RR42_RS33495	0.75	-0.4
2,930,980	+		RR42_RS33495	0.75	-1.8
2,930,980	+		RR42_RS33495	0.75	-1.1
2,930,981	-		RR42_RS33495	0.75	-0.8
2,930,981	-		RR42_RS33495	0.75	-1.2
2,930,981	-		RR42_RS33495	0.75	-0.8
2,930,981	-		RR42_RS33495	0.75	-1.2
2,930,981	-		RR42_RS33495	0.75	+0.1
2,930,981	-		RR42_RS33495	0.75	+0.3
2,930,981	-		RR42_RS33495	0.75	+0.0
2,930,981	-		RR42_RS33495	0.75	-0.7
2,930,981	-		RR42_RS33495	0.75	-0.3
2,930,981	-		RR42_RS33495	0.75	-0.3
2,930,981	-		RR42_RS33495	0.75	-0.3
2,930,981	-		RR42_RS33495	0.75	-1.8
2,930,981	-		RR42_RS33495	0.75	+0.0
2,930,981	-		RR42_RS33495	0.75	+0.4
2,930,981	-		RR42_RS33495	0.75	-0.2
2,931,020	+		RR42_RS33495	0.77	-0.6
2,931,022	+		RR42_RS33495	0.78	-1.7
2,931,022	+		RR42_RS33495	0.78	-1.7
2,931,022	+		RR42_RS33495	0.78	-0.7
2,931,022	+		RR42_RS33495	0.78	-1.7
2,931,022	+		RR42_RS33495	0.78	+0.5
2,931,022	+		RR42_RS33495	0.78	-0.3
2,931,022	+		RR42_RS33495	0.78	+0.9
2,931,023	-		RR42_RS33495	0.78	-1.0
2,931,023	-		RR42_RS33495	0.78	-1.9
2,931,034	+		RR42_RS33495	0.78	-2.0
2,931,034	+		RR42_RS33495	0.78	+0.1
2,931,073	+		RR42_RS33495	0.81	-0.2
2,931,073	+		RR42_RS33495	0.81	-1.2
2,931,073	+		RR42_RS33495	0.81	-0.3
2,931,074	-		RR42_RS33495	0.81	-1.7
2,931,312	-				-0.9
2,931,312	-				-1.3
2,931,347	+				-0.6
2,931,456	-				-1.3
2,931,738	+		RR42_RS33500	0.24	+0.9
2,931,741	+		RR42_RS33500	0.24	-1.7
2,931,741	+		RR42_RS33500	0.24	-0.6
2,931,741	+		RR42_RS33500	0.24	-0.6
2,931,742	-		RR42_RS33500	0.24	+0.8
2,931,742	-		RR42_RS33500	0.24	+0.2
2,931,744	+		RR42_RS33500	0.25	-1.4
2,931,745	-		RR42_RS33500	0.25	+0.1
2,932,033	-		RR42_RS33500	0.52	+0.1
2,932,140	+		RR42_RS33500	0.62	+0.1
2,932,140	+		RR42_RS33500	0.62	-2.3
2,932,140	+		RR42_RS33500	0.62	-1.7
2,932,140	+		RR42_RS33500	0.62	+1.2
2,932,141	-		RR42_RS33500	0.62	-0.4
2,932,141	-		RR42_RS33500	0.62	+0.5
2,932,141	-		RR42_RS33500	0.62	+1.3
2,932,141	-		RR42_RS33500	0.62	+0.9
2,932,177	-		RR42_RS33500	0.65	+0.3
2,932,278	+		RR42_RS33500	0.74	-1.5
2,932,278	+		RR42_RS33500	0.74	-1.7
2,932,278	+		RR42_RS33500	0.74	-0.1
2,932,278	+		RR42_RS33500	0.74	+1.9
2,932,279	-		RR42_RS33500	0.74	-0.4
2,932,279	-		RR42_RS33500	0.74	-0.3