Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS33490 and RR42_RS33495 are separated by 65 nucleotides RR42_RS33495 and RR42_RS33500 are separated by 143 nucleotides
RR42_RS33490: RR42_RS33490 - Aromatic-amino-acid aminotransferase (EC 2.6.1.57) (from data) , at 2,928,670 to 2,929,872
_RS33490
RR42_RS33495: RR42_RS33495 - L-phenylalanine:H+ symporter AroP (from data) , at 2,929,938 to 2,931,335
_RS33495
RR42_RS33500: RR42_RS33500 - 4-hydroxyphenylpyruvate dioxygenase, at 2,931,479 to 2,932,552
_RS33500
Position (kb)
2929
2930
2931
2932 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2928.961 kb on - strand, within RR42_RS33490 at 2929.025 kb on + strand, within RR42_RS33490 at 2929.025 kb on + strand, within RR42_RS33490 at 2929.026 kb on - strand, within RR42_RS33490 at 2929.189 kb on + strand, within RR42_RS33490 at 2929.233 kb on - strand, within RR42_RS33490 at 2929.428 kb on - strand, within RR42_RS33490 at 2929.433 kb on + strand, within RR42_RS33490 at 2929.433 kb on + strand, within RR42_RS33490 at 2929.523 kb on + strand, within RR42_RS33490 at 2929.523 kb on + strand, within RR42_RS33490 at 2929.524 kb on - strand, within RR42_RS33490 at 2929.679 kb on + strand, within RR42_RS33490 at 2929.766 kb on + strand at 2929.794 kb on - strand at 2929.877 kb on + strand at 2929.877 kb on + strand at 2929.878 kb on - strand at 2929.940 kb on - strand at 2929.999 kb on + strand at 2930.000 kb on - strand at 2930.038 kb on + strand at 2930.068 kb on + strand at 2930.068 kb on + strand at 2930.069 kb on - strand at 2930.069 kb on - strand at 2930.077 kb on + strand at 2930.077 kb on + strand at 2930.078 kb on - strand, within RR42_RS33495 at 2930.078 kb on - strand, within RR42_RS33495 at 2930.084 kb on + strand, within RR42_RS33495 at 2930.110 kb on + strand, within RR42_RS33495 at 2930.110 kb on + strand, within RR42_RS33495 at 2930.110 kb on + strand, within RR42_RS33495 at 2930.110 kb on + strand, within RR42_RS33495 at 2930.110 kb on + strand, within RR42_RS33495 at 2930.110 kb on + strand, within RR42_RS33495 at 2930.110 kb on + strand, within RR42_RS33495 at 2930.110 kb on + strand, within RR42_RS33495 at 2930.111 kb on - strand, within RR42_RS33495 at 2930.111 kb on - strand, within RR42_RS33495 at 2930.111 kb on - strand, within RR42_RS33495 at 2930.276 kb on - strand, within RR42_RS33495 at 2930.276 kb on - strand, within RR42_RS33495 at 2930.276 kb on - strand, within RR42_RS33495 at 2930.416 kb on + strand, within RR42_RS33495 at 2930.416 kb on + strand, within RR42_RS33495 at 2930.417 kb on - strand, within RR42_RS33495 at 2930.417 kb on - strand, within RR42_RS33495 at 2930.431 kb on + strand, within RR42_RS33495 at 2930.584 kb on + strand, within RR42_RS33495 at 2930.584 kb on + strand, within RR42_RS33495 at 2930.585 kb on - strand, within RR42_RS33495 at 2930.585 kb on - strand, within RR42_RS33495 at 2930.585 kb on - strand, within RR42_RS33495 at 2930.603 kb on - strand, within RR42_RS33495 at 2930.812 kb on + strand, within RR42_RS33495 at 2930.957 kb on + strand, within RR42_RS33495 at 2930.972 kb on - strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2931.020 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.023 kb on - strand, within RR42_RS33495 at 2931.023 kb on - strand, within RR42_RS33495 at 2931.034 kb on + strand, within RR42_RS33495 at 2931.034 kb on + strand, within RR42_RS33495 at 2931.073 kb on + strand, within RR42_RS33495 at 2931.073 kb on + strand, within RR42_RS33495 at 2931.073 kb on + strand, within RR42_RS33495 at 2931.074 kb on - strand, within RR42_RS33495 at 2931.312 kb on - strand at 2931.312 kb on - strand at 2931.347 kb on + strand at 2931.456 kb on - strand at 2931.738 kb on + strand, within RR42_RS33500 at 2931.741 kb on + strand, within RR42_RS33500 at 2931.741 kb on + strand, within RR42_RS33500 at 2931.741 kb on + strand, within RR42_RS33500 at 2931.742 kb on - strand, within RR42_RS33500 at 2931.742 kb on - strand, within RR42_RS33500 at 2931.744 kb on + strand, within RR42_RS33500 at 2931.745 kb on - strand, within RR42_RS33500 at 2932.033 kb on - strand, within RR42_RS33500 at 2932.140 kb on + strand, within RR42_RS33500 at 2932.140 kb on + strand, within RR42_RS33500 at 2932.140 kb on + strand, within RR42_RS33500 at 2932.140 kb on + strand, within RR42_RS33500 at 2932.141 kb on - strand, within RR42_RS33500 at 2932.141 kb on - strand, within RR42_RS33500 at 2932.141 kb on - strand, within RR42_RS33500 at 2932.141 kb on - strand, within RR42_RS33500 at 2932.177 kb on - strand, within RR42_RS33500 at 2932.278 kb on + strand, within RR42_RS33500 at 2932.278 kb on + strand, within RR42_RS33500 at 2932.278 kb on + strand, within RR42_RS33500 at 2932.278 kb on + strand, within RR42_RS33500 at 2932.279 kb on - strand, within RR42_RS33500 at 2932.279 kb on - strand, within RR42_RS33500
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 2,928,961 - RR42_RS33490 0.24 +1.6 2,929,025 + RR42_RS33490 0.30 +0.6 2,929,025 + RR42_RS33490 0.30 +0.3 2,929,026 - RR42_RS33490 0.30 -0.1 2,929,189 + RR42_RS33490 0.43 +0.9 2,929,233 - RR42_RS33490 0.47 -0.2 2,929,428 - RR42_RS33490 0.63 +0.3 2,929,433 + RR42_RS33490 0.63 +2.3 2,929,433 + RR42_RS33490 0.63 +0.2 2,929,523 + RR42_RS33490 0.71 +1.1 2,929,523 + RR42_RS33490 0.71 -0.7 2,929,524 - RR42_RS33490 0.71 +0.4 2,929,679 + RR42_RS33490 0.84 +0.0 2,929,766 + +0.8 2,929,794 - -0.7 2,929,877 + +1.0 2,929,877 + +0.8 2,929,878 - +1.3 2,929,940 - +2.9 2,929,999 + -0.5 2,930,000 - -1.9 2,930,038 + +0.2 2,930,068 + -0.5 2,930,068 + -0.1 2,930,069 - -1.2 2,930,069 - +1.2 2,930,077 + -1.8 2,930,077 + -1.7 2,930,078 - RR42_RS33495 0.10 +0.3 2,930,078 - RR42_RS33495 0.10 -1.0 2,930,084 + RR42_RS33495 0.10 +0.5 2,930,110 + RR42_RS33495 0.12 -0.7 2,930,110 + RR42_RS33495 0.12 -1.1 2,930,110 + RR42_RS33495 0.12 -2.2 2,930,110 + RR42_RS33495 0.12 +0.4 2,930,110 + RR42_RS33495 0.12 -0.7 2,930,110 + RR42_RS33495 0.12 -1.0 2,930,110 + RR42_RS33495 0.12 -0.3 2,930,110 + RR42_RS33495 0.12 -1.9 2,930,111 - RR42_RS33495 0.12 +0.1 2,930,111 - RR42_RS33495 0.12 -1.8 2,930,111 - RR42_RS33495 0.12 -0.1 2,930,276 - RR42_RS33495 0.24 -1.9 2,930,276 - RR42_RS33495 0.24 +1.1 2,930,276 - RR42_RS33495 0.24 -0.5 2,930,416 + RR42_RS33495 0.34 -0.4 2,930,416 + RR42_RS33495 0.34 -0.7 2,930,417 - RR42_RS33495 0.34 -0.6 2,930,417 - RR42_RS33495 0.34 +0.2 2,930,431 + RR42_RS33495 0.35 +0.5 2,930,584 + RR42_RS33495 0.46 -0.9 2,930,584 + RR42_RS33495 0.46 +0.9 2,930,585 - RR42_RS33495 0.46 -0.3 2,930,585 - RR42_RS33495 0.46 -1.7 2,930,585 - RR42_RS33495 0.46 -0.1 2,930,603 - RR42_RS33495 0.48 -0.9 2,930,812 + RR42_RS33495 0.63 -0.8 2,930,957 + RR42_RS33495 0.73 +0.4 2,930,972 - RR42_RS33495 0.74 +0.0 2,930,980 + RR42_RS33495 0.75 -0.2 2,930,980 + RR42_RS33495 0.75 -0.3 2,930,980 + RR42_RS33495 0.75 -0.8 2,930,980 + RR42_RS33495 0.75 -1.0 2,930,980 + RR42_RS33495 0.75 -0.6 2,930,980 + RR42_RS33495 0.75 -0.4 2,930,980 + RR42_RS33495 0.75 -1.8 2,930,980 + RR42_RS33495 0.75 -1.1 2,930,981 - RR42_RS33495 0.75 -0.8 2,930,981 - RR42_RS33495 0.75 -1.2 2,930,981 - RR42_RS33495 0.75 -0.8 2,930,981 - RR42_RS33495 0.75 -1.2 2,930,981 - RR42_RS33495 0.75 +0.1 2,930,981 - RR42_RS33495 0.75 +0.3 2,930,981 - RR42_RS33495 0.75 +0.0 2,930,981 - RR42_RS33495 0.75 -0.7 2,930,981 - RR42_RS33495 0.75 -0.3 2,930,981 - RR42_RS33495 0.75 -0.3 2,930,981 - RR42_RS33495 0.75 -0.3 2,930,981 - RR42_RS33495 0.75 -1.8 2,930,981 - RR42_RS33495 0.75 +0.0 2,930,981 - RR42_RS33495 0.75 +0.4 2,930,981 - RR42_RS33495 0.75 -0.2 2,931,020 + RR42_RS33495 0.77 -0.6 2,931,022 + RR42_RS33495 0.78 -1.7 2,931,022 + RR42_RS33495 0.78 -1.7 2,931,022 + RR42_RS33495 0.78 -0.7 2,931,022 + RR42_RS33495 0.78 -1.7 2,931,022 + RR42_RS33495 0.78 +0.5 2,931,022 + RR42_RS33495 0.78 -0.3 2,931,022 + RR42_RS33495 0.78 +0.9 2,931,023 - RR42_RS33495 0.78 -1.0 2,931,023 - RR42_RS33495 0.78 -1.9 2,931,034 + RR42_RS33495 0.78 -2.0 2,931,034 + RR42_RS33495 0.78 +0.1 2,931,073 + RR42_RS33495 0.81 -0.2 2,931,073 + RR42_RS33495 0.81 -1.2 2,931,073 + RR42_RS33495 0.81 -0.3 2,931,074 - RR42_RS33495 0.81 -1.7 2,931,312 - -0.9 2,931,312 - -1.3 2,931,347 + -0.6 2,931,456 - -1.3 2,931,738 + RR42_RS33500 0.24 +0.9 2,931,741 + RR42_RS33500 0.24 -1.7 2,931,741 + RR42_RS33500 0.24 -0.6 2,931,741 + RR42_RS33500 0.24 -0.6 2,931,742 - RR42_RS33500 0.24 +0.8 2,931,742 - RR42_RS33500 0.24 +0.2 2,931,744 + RR42_RS33500 0.25 -1.4 2,931,745 - RR42_RS33500 0.25 +0.1 2,932,033 - RR42_RS33500 0.52 +0.1 2,932,140 + RR42_RS33500 0.62 +0.1 2,932,140 + RR42_RS33500 0.62 -2.3 2,932,140 + RR42_RS33500 0.62 -1.7 2,932,140 + RR42_RS33500 0.62 +1.2 2,932,141 - RR42_RS33500 0.62 -0.4 2,932,141 - RR42_RS33500 0.62 +0.5 2,932,141 - RR42_RS33500 0.62 +1.3 2,932,141 - RR42_RS33500 0.62 +0.9 2,932,177 - RR42_RS33500 0.65 +0.3 2,932,278 + RR42_RS33500 0.74 -1.5 2,932,278 + RR42_RS33500 0.74 -1.7 2,932,278 + RR42_RS33500 0.74 -0.1 2,932,278 + RR42_RS33500 0.74 +1.9 2,932,279 - RR42_RS33500 0.74 -0.4 2,932,279 - RR42_RS33500 0.74 -0.3
Or see this region's nucleotide sequence