Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33475

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,925,918	+				+0.1
2,925,918	+				-1.8
2,925,919	-				-0.2
2,925,919	-				-2.1
2,925,919	-				-1.4
2,925,919	-				-0.5
2,926,391	-				+0.6
2,926,407	+				+1.0
2,926,407	+				+0.5
2,926,407	+				+0.8
2,926,408	-				+0.8
2,926,408	-				+0.3
2,926,434	-		RR42_RS33470	0.14	-0.0
2,926,585	+		RR42_RS33470	0.60	+0.2
2,926,586	-		RR42_RS33470	0.60	+0.6
2,926,586	-		RR42_RS33470	0.60	+0.1
2,926,586	-		RR42_RS33470	0.60	+2.5
2,926,621	+		RR42_RS33470	0.71	+0.2
2,926,622	-		RR42_RS33470	0.71	+0.4
2,926,622	-		RR42_RS33470	0.71	+0.0
2,926,625	+		RR42_RS33470	0.72	+1.6
2,926,625	+		RR42_RS33470	0.72	-1.1
2,926,648	+		RR42_RS33470	0.79	+1.9
2,926,648	+		RR42_RS33470	0.79	+2.1
2,926,648	+		RR42_RS33470	0.79	+1.6
2,926,649	-		RR42_RS33470	0.80	-1.2
2,926,649	-		RR42_RS33470	0.80	-1.2
2,926,649	-		RR42_RS33470	0.80	-0.2
2,926,649	-		RR42_RS33470	0.80	+0.7
2,926,649	-		RR42_RS33470	0.80	-0.3
2,926,652	+		RR42_RS33470	0.80	+1.4
2,926,652	+		RR42_RS33470	0.80	-0.1
2,926,653	-		RR42_RS33470	0.81	-1.2
2,926,690	+				-0.3
2,926,690	+				+0.5
2,926,767	+				+1.0
2,926,768	-				-1.5
2,926,768	-				-2.3
2,926,849	+		RR42_RS33475	0.27	+3.3
2,926,850	-		RR42_RS33475	0.27	-1.7
2,926,850	-		RR42_RS33475	0.27	-3.0
2,926,850	-		RR42_RS33475	0.27	-3.8
2,926,850	-		RR42_RS33475	0.27	-2.5
2,926,850	-		RR42_RS33475	0.27	-3.6
2,926,850	-		RR42_RS33475	0.27	-2.1
2,926,873	+		RR42_RS33475	0.39	+1.3
2,927,013	-				-0.1
2,927,042	-				-4.0
2,927,134	+				-0.6
2,927,134	+				-0.3
2,927,135	-				-1.5
2,927,135	-				-2.1
2,927,135	-				-2.4
2,927,138	+				+1.7
2,927,146	-				-3.1
2,927,146	-				-3.2
2,927,146	-				-4.1
2,927,346	+				+0.5
2,927,346	+				+0.2
2,927,362	+				+0.7
2,927,363	-				-0.7
2,927,503	+		RR42_RS33480	0.21	+0.2
2,927,593	+		RR42_RS33480	0.32	+1.3
2,927,593	+		RR42_RS33480	0.32	+0.7
2,927,593	+		RR42_RS33480	0.32	+0.4
2,927,593	+		RR42_RS33480	0.32	+1.0
2,927,594	-		RR42_RS33480	0.32	-3.7
2,927,594	-		RR42_RS33480	0.32	-1.1
2,927,594	-		RR42_RS33480	0.32	-1.7
2,927,594	-		RR42_RS33480	0.32	-1.1
2,927,594	-		RR42_RS33480	0.32	-0.7
2,927,594	-		RR42_RS33480	0.32	-1.7
2,927,594	-		RR42_RS33480	0.32	-4.0
2,927,594	-		RR42_RS33480	0.32	-0.5
2,927,594	-		RR42_RS33480	0.32	-1.1
2,927,729	-		RR42_RS33480	0.49	-1.1
2,927,729	-		RR42_RS33480	0.49	-2.5
2,927,729	-		RR42_RS33480	0.49	-2.2
2,927,729	-		RR42_RS33480	0.49	-2.3
2,927,821	+		RR42_RS33480	0.60	+1.2
2,927,858	+		RR42_RS33480	0.64	-0.6
2,927,858	+		RR42_RS33480	0.64	-0.0
2,927,859	-		RR42_RS33480	0.65	-1.0
2,927,872	+		RR42_RS33480	0.66	+1.3
2,927,872	+		RR42_RS33480	0.66	-1.0
2,927,873	-		RR42_RS33480	0.66	-2.3
2,927,892	+		RR42_RS33480	0.69	-1.1
2,927,902	+		RR42_RS33480	0.70	+1.0
2,927,903	-		RR42_RS33480	0.70	+1.4
2,927,971	+		RR42_RS33480	0.78	-0.4
2,927,971	+		RR42_RS33480	0.78	-0.0
2,927,972	-		RR42_RS33480	0.78	+1.3
2,927,972	-		RR42_RS33480	0.78	-2.2