Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33295

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,884,421	+		RR42_RS33290	0.59	-0.8
2,884,421	+		RR42_RS33290	0.59	+0.3
2,884,421	+		RR42_RS33290	0.59	+0.9
2,884,421	+		RR42_RS33290	0.59	+0.5
2,884,422	-		RR42_RS33290	0.59	+2.2
2,884,422	-		RR42_RS33290	0.59	+1.6
2,884,422	-		RR42_RS33290	0.59	-0.1
2,884,443	-		RR42_RS33290	0.60	-0.0
2,884,443	-		RR42_RS33290	0.60	+0.5
2,884,517	+		RR42_RS33290	0.64	-0.3
2,884,517	+		RR42_RS33290	0.64	+1.6
2,884,518	-		RR42_RS33290	0.64	+0.9
2,884,535	+		RR42_RS33290	0.65	+0.6
2,884,536	-		RR42_RS33290	0.65	+1.3
2,884,536	-		RR42_RS33290	0.65	-0.0
2,884,550	+		RR42_RS33290	0.65	-0.6
2,884,550	+		RR42_RS33290	0.65	+0.4
2,884,550	+		RR42_RS33290	0.65	+0.6
2,884,550	+		RR42_RS33290	0.65	-0.8
2,884,551	-		RR42_RS33290	0.65	+1.0
2,884,551	-		RR42_RS33290	0.65	+0.9
2,884,592	-		RR42_RS33290	0.68	-1.0
2,884,612	+		RR42_RS33290	0.69	-0.0
2,884,612	+		RR42_RS33290	0.69	+0.3
2,884,612	+		RR42_RS33290	0.69	-0.2
2,884,616	+		RR42_RS33290	0.69	-0.4
2,884,617	-		RR42_RS33290	0.69	+0.7
2,884,617	-		RR42_RS33290	0.69	+0.9
2,884,617	-		RR42_RS33290	0.69	+0.8
2,884,617	-		RR42_RS33290	0.69	+0.5
2,884,661	+		RR42_RS33290	0.71	+0.2
2,884,661	+		RR42_RS33290	0.71	+0.1
2,884,661	+		RR42_RS33290	0.71	-0.1
2,884,661	+		RR42_RS33290	0.71	+0.9
2,884,661	+		RR42_RS33290	0.71	+0.8
2,884,661	+		RR42_RS33290	0.71	+1.3
2,884,661	+		RR42_RS33290	0.71	-1.0
2,884,661	+		RR42_RS33290	0.71	-0.5
2,884,661	+		RR42_RS33290	0.71	-0.3
2,884,661	+		RR42_RS33290	0.71	-0.8
2,884,662	-		RR42_RS33290	0.71	-0.2
2,884,662	-		RR42_RS33290	0.71	+0.7
2,884,662	-		RR42_RS33290	0.71	+1.6
2,884,662	-		RR42_RS33290	0.71	-0.3
2,884,662	-		RR42_RS33290	0.71	+0.3
2,884,662	-		RR42_RS33290	0.71	-0.7
2,885,059	+				-0.6
2,885,060	-				+0.5
2,885,168	+				-0.6
2,885,199	-				-0.7
2,885,232	-				-0.2
2,885,232	-				-0.1
2,885,232	-				-1.7
2,885,383	+		RR42_RS33295	0.13	-0.1
2,885,383	+		RR42_RS33295	0.13	-3.3
2,885,384	-		RR42_RS33295	0.13	+1.1
2,885,384	-		RR42_RS33295	0.13	-0.5
2,885,394	+		RR42_RS33295	0.16	-0.3
2,885,394	+		RR42_RS33295	0.16	-1.3
2,885,395	-		RR42_RS33295	0.16	+0.8
2,885,395	-		RR42_RS33295	0.16	+0.6
2,885,395	-		RR42_RS33295	0.16	-0.4
2,885,406	+		RR42_RS33295	0.18	-0.1
2,885,406	+		RR42_RS33295	0.18	+1.1
2,885,407	-		RR42_RS33295	0.18	-0.2
2,885,407	-		RR42_RS33295	0.18	+0.3
2,885,407	-		RR42_RS33295	0.18	+0.9
2,885,478	+		RR42_RS33295	0.34	-1.4
2,885,479	-		RR42_RS33295	0.34	-0.3
2,885,538	+		RR42_RS33295	0.47	+0.2
2,885,538	+		RR42_RS33295	0.47	+0.1
2,885,538	+		RR42_RS33295	0.47	+0.3
2,885,539	-		RR42_RS33295	0.47	-0.0
2,885,539	-		RR42_RS33295	0.47	-0.6
2,885,539	-		RR42_RS33295	0.47	-0.7
2,885,539	-		RR42_RS33295	0.47	-0.6
2,885,539	-		RR42_RS33295	0.47	-1.1
2,885,539	-		RR42_RS33295	0.47	+1.1
2,885,580	+		RR42_RS33295	0.56	-1.0
2,885,580	+		RR42_RS33295	0.56	+0.2
2,885,597	+		RR42_RS33295	0.60	-0.2
2,885,597	+		RR42_RS33295	0.60	+0.2
2,885,597	+		RR42_RS33295	0.60	+0.3
2,885,597	+		RR42_RS33295	0.60	-0.0
2,885,688	+		RR42_RS33295	0.79	-0.1
2,885,689	-		RR42_RS33295	0.79	+0.1
2,885,730	+		RR42_RS33295	0.88	-0.2
2,885,731	-		RR42_RS33295	0.89	+0.2
2,885,731	-		RR42_RS33295	0.89	+0.5
2,885,766	+				-0.3
2,885,782	-				+0.3
2,885,800	-				+0.8
2,885,971	+				-1.1
2,886,063	+				+0.6
2,886,194	-				-0.1
2,886,194	-				+1.2
2,886,206	-				-2.8
2,886,224	-				-0.4
2,886,429	+		RR42_RS33300	0.32	+0.2
2,886,429	+		RR42_RS33300	0.32	-0.1
2,886,429	+		RR42_RS33300	0.32	+1.2
2,886,429	+		RR42_RS33300	0.32	-0.2
2,886,429	+		RR42_RS33300	0.32	+0.7
2,886,429	+		RR42_RS33300	0.32	-0.6
2,886,429	+		RR42_RS33300	0.32	-1.3
2,886,429	+		RR42_RS33300	0.32	-0.1
2,886,429	+		RR42_RS33300	0.32	-0.1
2,886,430	-		RR42_RS33300	0.32	-1.1
2,886,430	-		RR42_RS33300	0.32	-0.9
2,886,430	-		RR42_RS33300	0.32	+0.7
2,886,455	-		RR42_RS33300	0.36	-0.9
2,886,455	-		RR42_RS33300	0.36	+1.1
2,886,686	+		RR42_RS33300	0.69	-0.8
2,886,687	-		RR42_RS33300	0.69	-0.3