Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33175

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,846,790	+		RR42_RS33170	0.30	-1.0
2,846,791	-		RR42_RS33170	0.30	+0.9
2,846,791	-		RR42_RS33170	0.30	-2.0
2,846,791	-		RR42_RS33170	0.30	-0.1
2,846,959	+		RR42_RS33170	0.45	-0.5
2,847,216	+		RR42_RS33170	0.67	+0.5
2,847,217	-		RR42_RS33170	0.68	-0.3
2,847,239	-		RR42_RS33170	0.70	+1.6
2,847,264	+		RR42_RS33170	0.72	-1.1
2,847,285	+		RR42_RS33170	0.74	-2.0
2,847,285	+		RR42_RS33170	0.74	-0.7
2,847,286	-		RR42_RS33170	0.74	-0.1
2,847,321	+		RR42_RS33170	0.77	+0.8
2,847,321	+		RR42_RS33170	0.77	+0.2
2,847,394	+		RR42_RS33170	0.83	-0.8
2,847,426	+		RR42_RS33170	0.86	-0.1
2,847,426	+		RR42_RS33170	0.86	-0.2
2,847,426	+		RR42_RS33170	0.86	+0.7
2,847,427	-		RR42_RS33170	0.86	-0.1
2,847,427	-		RR42_RS33170	0.86	-2.4
2,847,427	-		RR42_RS33170	0.86	-3.3
2,847,427	-		RR42_RS33170	0.86	+0.2
2,847,571	-				-1.1
2,847,571	-				-1.7
2,847,802	-				-0.0
2,848,205	+		RR42_RS33175	0.26	+0.5
2,848,205	+		RR42_RS33175	0.26	-0.1
2,848,205	+		RR42_RS33175	0.26	-2.1
2,848,206	-		RR42_RS33175	0.26	+0.1
2,848,206	-		RR42_RS33175	0.26	+0.4
2,848,206	-		RR42_RS33175	0.26	+1.2
2,848,206	-		RR42_RS33175	0.26	+1.1
2,848,212	-		RR42_RS33175	0.27	+0.2
2,848,212	-		RR42_RS33175	0.27	-1.9
2,848,212	-		RR42_RS33175	0.27	-0.5
2,849,138	+		RR42_RS33175	0.81	+0.4
2,849,138	+		RR42_RS33175	0.81	+0.9
2,849,139	-		RR42_RS33175	0.81	-0.5
2,849,318	+				+0.2
2,849,318	+				-1.2
2,849,318	+				+1.9
2,849,319	-				+0.9
2,849,319	-				-1.1
2,849,451	+				+1.2
2,849,492	+				-0.1
2,849,492	+				+0.5
2,849,493	-				-0.0
2,849,500	+				-1.6
2,849,501	-				+0.3
2,849,533	-				+1.4
2,849,540	+				-1.7
2,849,540	+				+0.9
2,849,541	-				+0.7
2,849,556	+				+0.1
2,849,557	-				-1.4
2,849,675	+				+0.2
2,849,676	-				-0.6
2,849,676	-				+0.1
2,849,712	+				-0.8
2,849,717	-				-0.4
2,849,742	+				-2.9
2,849,744	+				-0.2
2,849,747	+				-0.0
2,849,783	+				+0.7
2,849,783	+				-0.5
2,849,938	+				-0.1
2,849,952	+				+0.7
2,849,952	+				+0.8
2,849,953	-				-0.2
2,849,953	-				-0.4
2,849,953	-				+0.5
2,850,004	+				-3.0
2,850,004	+				-2.7
2,850,004	+				+0.4
2,850,005	-				-2.8
2,850,005	-				-2.2
2,850,005	-				-1.9
2,850,005	-				+0.9
2,850,252	-		RR42_RS33180	0.38	-1.3
2,850,410	-		RR42_RS33180	0.58	-2.5
2,850,427	+		RR42_RS33180	0.60	-0.3
2,850,428	-		RR42_RS33180	0.60	-1.2
2,850,428	-		RR42_RS33180	0.60	-1.0
2,850,428	-		RR42_RS33180	0.60	-1.3
2,850,428	-		RR42_RS33180	0.60	-1.1