Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32985

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,800,661	-		RR42_RS32980	0.71	-1.6
2,800,786	-		RR42_RS32980	0.75	-1.0
2,800,786	-		RR42_RS32980	0.75	-0.2
2,800,806	+		RR42_RS32980	0.76	-0.4
2,800,807	-		RR42_RS32980	0.76	+0.9
2,800,807	-		RR42_RS32980	0.76	+0.2
2,800,873	-		RR42_RS32980	0.79	+0.2
2,800,987	-		RR42_RS32980	0.83	-0.3
2,801,100	+		RR42_RS32980	0.87	-1.9
2,801,100	+		RR42_RS32980	0.87	+1.2
2,801,101	-		RR42_RS32980	0.87	+0.5
2,801,253	+				+0.0
2,801,261	+				+0.3
2,801,476	+				+0.4
2,801,477	-				-1.4
2,801,594	-				-2.1
2,801,594	-				-0.7
2,801,838	-		RR42_RS32985	0.34	-0.9
2,801,924	-		RR42_RS32985	0.43	-0.4
2,801,924	-		RR42_RS32985	0.43	-0.1
2,801,924	-		RR42_RS32985	0.43	+0.8
2,801,930	+		RR42_RS32985	0.43	-2.3
2,801,930	+		RR42_RS32985	0.43	-1.5
2,801,930	+		RR42_RS32985	0.43	+0.4
2,801,930	+		RR42_RS32985	0.43	+0.5
2,801,930	+		RR42_RS32985	0.43	-1.5
2,801,930	+		RR42_RS32985	0.43	-0.0
2,801,931	-		RR42_RS32985	0.43	-0.4
2,801,931	-		RR42_RS32985	0.43	+0.7
2,801,931	-		RR42_RS32985	0.43	+0.1
2,801,931	-		RR42_RS32985	0.43	+0.2
2,802,016	+		RR42_RS32985	0.52	+0.2
2,802,017	-		RR42_RS32985	0.52	-0.1
2,802,212	+		RR42_RS32985	0.72	+0.9
2,802,212	+		RR42_RS32985	0.72	+0.9
2,802,212	+		RR42_RS32985	0.72	+0.3
2,802,213	-		RR42_RS32985	0.72	+0.2
2,802,213	-		RR42_RS32985	0.72	+0.7
2,802,213	-		RR42_RS32985	0.72	+0.0
2,802,213	-		RR42_RS32985	0.72	-0.9
2,802,213	-		RR42_RS32985	0.72	-0.1
2,802,215	-		RR42_RS32985	0.72	-0.1
2,802,215	-		RR42_RS32985	0.72	+0.2
2,802,496	+				-1.7
2,802,668	+				+0.2
2,802,668	+				-0.9
2,802,668	+				+0.9
2,802,669	-				+1.2
2,802,670	+				-1.7
2,802,707	-				+0.9
2,802,707	-				-0.6
2,802,707	-				-0.7
2,802,875	-		RR42_RS32990	0.23	+2.6
2,803,087	+		RR42_RS32990	0.43	-3.8
2,803,088	-		RR42_RS32990	0.44	-1.5
2,803,088	-		RR42_RS32990	0.44	+0.4
2,803,333	+		RR42_RS32990	0.68	-1.4
2,803,333	+		RR42_RS32990	0.68	-2.1
2,803,333	+		RR42_RS32990	0.68	-3.1
2,803,348	+		RR42_RS32990	0.69	-3.6
2,803,348	+		RR42_RS32990	0.69	-3.2